Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of LiuR in Leptothrix cholodnii SP-6

Properties
Regulator type: Transcription factor
TF locus tag: Lcho_4201
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Comamonadaceae
Statistics of regulated genes:
- Genes 9
- Operons 4
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 59 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -73
Score: 5.7
Sequence: ACTTACGTTTACGTCAAC
Locus tag: Lcho_4201
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
liuR
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family

Position: -36
Score: 6.6
Sequence: ATTGACGTTAACGTAAAC
Position: -30
Score: 5.2
Sequence: GTTAACGTAAACGTCAAT
Locus tag: Lcho_4202
Name: paaI
Funciton: Phenylacetic acid degradation protein paaI
Locus tag: Lcho_4203
Name: cah
Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: Lcho_4204
Name: aceK
Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: Lcho_4205
Name: ivdA
Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: Lcho_4206
Name: null
Funciton: Putative amino acid efflux transporter, Rht family
Locus tag: Lcho_4207
Name: ivdC
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
paaI
Phenylacetic acid degradation protein paaI
cah
Carbonic anhydrase (EC 4.2.1.1)
aceK
Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
ivdA
Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Putative amino acid efflux transporter, Rht family
ivdC
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)

Position: -78
Score: 5.7
Sequence: TATGACGTTTACGTAAAC
Position: -72
Score: 5.3
Sequence: GTTTACGTAAACGTCAAT
Locus tag: Lcho_3844
Name: mcm
Funciton: Methylmalonyl-CoA mutase (EC 5.4.99.2)
mcm
Methylmalonyl-CoA mutase (EC 5.4.99.2)

Position: -99
Score: 6.4
Sequence: ATTGACGTTTACGTCAAC
Position: -93
Score: 5.5
Sequence: GTTTACGTCAACGTCAAC
Locus tag: Lcho_2559
Name: paaH
Funciton: 3-hydroxyacyl-CoA dehydrogenase
paaH
3-hydroxyacyl-CoA dehydrogenase
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