Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of LiuR in Polaromonas naphthalenivorans CJ2

Properties
Regulator type: Transcription factor
TF locus tag: Pnap_0453
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Comamonadaceae
Statistics of regulated genes:
- Genes 12
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 59 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -86
Score: 6.3
Sequence: TTTGACGTTTACGTAAAC
Position: -80
Score: 5.1
Sequence: GTTTACGTAAACGTAAGA
Locus tag: Pnap_0453
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
liuR
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family

Position: -74
Score: 6.6
Sequence: ATTGACGTTTACGTAAAC
Position: -68
Score: 5.1
Sequence: GTTTACGTAAACGTCAAG
Locus tag: Pnap_0454
Name: paaI
Funciton: Phenylacetic acid degradation protein paaI
Locus tag: Pnap_0455
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: Pnap_0456
Name: cah
Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: Pnap_0457
Name: aceK
Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: Pnap_0458
Name: ivdA
Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: Pnap_0459
Name: ivdC
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
paaI
Phenylacetic acid degradation protein paaI
liuA
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
cah
Carbonic anhydrase (EC 4.2.1.1)
aceK
Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
ivdA
Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
ivdC
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)

Position: -81
Score: 6.6
Sequence: GTTGACGTTTACGTAAAC
Position: -75
Score: 4.8
Sequence: GTTTACGTAAACGTAATA
Locus tag: Pnap_3524
Name: mcm
Funciton: Methylmalonyl-CoA mutase (EC 5.4.99.2)
mcm
Methylmalonyl-CoA mutase (EC 5.4.99.2)

Position: -50
Score: 5.6
Sequence: GCTTACGTTTACGTCAAC
Position: -44
Score: 5.1
Sequence: GTTTACGTCAACGTCAAT
Locus tag: Pnap_1223
Name: etfB
Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: Pnap_1224
Name: etfA
Funciton: Electron transfer flavoprotein, alpha subunit
Locus tag: Pnap_1225
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
etfB
Electron transfer flavoprotein, beta subunit
etfA
Electron transfer flavoprotein, alpha subunit
acdH
Acyl-CoA dehydrogenase (EC 1.3.99.3)

Position: -86
Score: 6.1
Sequence: ATTGACGTTGACGTAAAC
Position: -80
Score: 5.5
Sequence: GTTGACGTAAACGTCAAA
Locus tag: Pnap_1609
Name: paaH
Funciton: 3-hydroxyacyl-CoA dehydrogenase
paaH
3-hydroxyacyl-CoA dehydrogenase
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