Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of LiuR in Delftia acidovorans SPH-1

Properties
Regulator type: Transcription factor
TF locus tag: Daci_5993
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Comamonadaceae
Statistics of regulated genes:
- Genes 15
- Operons 4
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 59 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -37
Score: 6.6
Sequence: ATTGACGTTTACGTAAAC
Position: -31
Score: 5
Sequence: GTTTACGTAAACGTAATT
Locus tag: Daci_5992
Name: paaI
Funciton: Phenylacetic acid degradation protein paaI
Locus tag: Daci_5991
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: Daci_5990
Name: cah
Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: Daci_5989
Name: aceK
Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: Daci_5988
Name: ivdA
Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: Daci_5987
Name: null
Funciton: pyridoxamine 5'-phosphate oxidase-related, FMN-binding
Locus tag: Daci_5986
Name: null
Funciton: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Locus tag: Daci_5985
Name: ivdC
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: Daci_5984
Name: Daci_5984
Funciton: Alpha/beta hydrolase fold (EC 3.8.1.5)
paaI
Phenylacetic acid degradation protein paaI
liuA
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
cah
Carbonic anhydrase (EC 4.2.1.1)
aceK
Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
ivdA
Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
pyridoxamine 5'-phosphate oxidase-related, FMN-binding
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
ivdC
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Daci_5984
Alpha/beta hydrolase fold (EC 3.8.1.5)

Position: -46
Score: 6.4
Sequence: ATTGACGTTAACGTCAAC
Locus tag: Daci_5993
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
liuR
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family

Position: -50
Score: 5.2
Sequence: ATTTCGGTTTACGTAAAC
Position: -44
Score: 5.3
Sequence: GTTTACGTAAACGTCAAT
Locus tag: Daci_2390
Name: etfB
Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: Daci_2391
Name: etfA
Funciton: Electron transfer flavoprotein, alpha subunit
Locus tag: Daci_2392
Name: livK
Funciton: Branched-chain amino acid ABC transport system, periplasmic binding component
Locus tag: Daci_2393
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
etfB
Electron transfer flavoprotein, beta subunit
etfA
Electron transfer flavoprotein, alpha subunit
livK
Branched-chain amino acid ABC transport system, periplasmic binding component
acdH
Acyl-CoA dehydrogenase (EC 1.3.99.3)

Position: -42
Score: 5.6
Sequence: AGTTACGTTTACGTCAAC
Locus tag: Daci_4744
Name: paaH
Funciton: 3-hydroxyacyl-CoA dehydrogenase
paaH
3-hydroxyacyl-CoA dehydrogenase
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