Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of LiuR in Acidovorax sp. JS42

Properties
Regulator type: Transcription factor
TF locus tag: Ajs_3780
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Comamonadaceae
Statistics of regulated genes:
- Genes 11
- Operons 4
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 59 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -134
Score: 6.6
Sequence: ATTGACGTTTACGTAAAC
Position: -128
Score: 4.8
Sequence: GTTTACGTAAACGTAATA
Locus tag: Ajs_3779
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: Ajs_3778
Name: cah
Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: Ajs_3777
Name: aceK
Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: Ajs_3776
Name: ivdA
Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: Ajs_3775
Name: null
Funciton: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Locus tag: Ajs_3774
Name: ivdC
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
liuA
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
cah
Carbonic anhydrase (EC 4.2.1.1)
aceK
Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
ivdA
Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
ivdC
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)

Position: -59
Score: 6
Sequence: ATTGACGTTCACGTCAAC
Locus tag: Ajs_3780
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
liuR
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family

Position: -45
Score: 5.1
Sequence: GTTTACGTAAACGTCAAG
Locus tag: Ajs_2810
Name: etfB
Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: Ajs_2809
Name: etfA
Funciton: Electron transfer flavoprotein, alpha subunit
Locus tag: Ajs_2808
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
etfB
Electron transfer flavoprotein, beta subunit
etfA
Electron transfer flavoprotein, alpha subunit
acdH
Acyl-CoA dehydrogenase (EC 1.3.99.3)

Position: -37
Score: 6.1
Sequence: ATTAACGTTTACGTTAAC
Position: -31
Score: 5.3
Sequence: GTTTACGTTAACGTAACT
Locus tag: Ajs_1606
Name: paaH
Funciton: 3-hydroxyacyl-CoA dehydrogenase
paaH
3-hydroxyacyl-CoA dehydrogenase
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Regulatory Sites [ FASTA format ] DOWNLOAD