Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of LexA in Rhodoferax ferrireducens DSM 15236

Properties
Regulator type: Transcription factor
TF locus tag: Rfer_2994
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Comamonadaceae
Statistics of regulated genes:
- Genes 11
- Operons 6
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 71 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -84
Score: 5.9
Sequence: AACTGATTAAAAATACAGTT
Position: -65
Score: 4.6
Sequence: TACTGAATACAACAACAGTG
Locus tag: Rfer_2994
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)

Position: -48
Score: 5.3
Sequence: TACTGTTGTTTTATACAGTT
Locus tag: Rfer_1225
Name: imuA
Funciton: Predicted RecA/RadA recombinase
Locus tag: Rfer_1226
Name: imuB
Funciton: DNA polymerase-like protein PA0670
Locus tag: Rfer_1227
Name: dnaE2
Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
imuA
Predicted RecA/RadA recombinase
imuB
DNA polymerase-like protein PA0670
dnaE2
DNA polymerase III alpha subunit (EC 2.7.7.7)

Position: -38
Score: 4.2
Sequence: AGCTGTGCTTTCATACAGCC
Locus tag: Rfer_2642
Name: parE
Funciton: Topoisomerase IV subunit B (EC 5.99.1.-)
Locus tag: Rfer_2641
Name: parC
Funciton: Topoisomerase IV subunit A (EC 5.99.1.-)
parE
Topoisomerase IV subunit B (EC 5.99.1.-)
parC
Topoisomerase IV subunit A (EC 5.99.1.-)

Position: -10
Score: 5
Sequence: TACTGTATGGATGATCAGTA
Locus tag: Rfer_4342
Name: umuD
Funciton: DNA polymerase V, subunit UmuD
Locus tag: Rfer_4341
Name: umuC
Funciton: DNA polymerase V, subunit UmuC
umuD
DNA polymerase V, subunit UmuD
umuC
DNA polymerase V, subunit UmuC

Position: -38
Score: 4.3
Sequence: TACTGTTCAAGCATCCAGCC
Locus tag: Rfer_3948
Name: recA
Funciton: Recombinase A
Locus tag: Rfer_3947
Name: recX
Funciton: Regulatory protein RecX
recA
Recombinase A
recX
Regulatory protein RecX

Position: -31
Score: 4.9
Sequence: ATCTGTTTTTCCATACAGTA
Locus tag: Rfer_0500
Name: radA
Funciton: DNA repair protein RadA
radA
DNA repair protein RadA
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