Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NtrC in Leptothrix cholodnii SP-6

Properties
Regulator type: Transcription factor
TF locus tag: Lcho_3584
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Regulog: NtrC - Comamonadaceae
Statistics of regulated genes:
- Genes 9
- Operons 3
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 52 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -193
Score: 5.3
Sequence: TGCACTGAATTGGTGCC
Locus tag: Lcho_3942
Name: glnK
Funciton: Nitrogen regulatory protein P-II
Locus tag: Lcho_3941
Name: amtB
Funciton: Ammonium transporter
glnK
Nitrogen regulatory protein P-II
amtB
Ammonium transporter

Position: -225
Score: 4.6
Sequence: GGCCCCGAAATGGTGCG
Position: -178
Score: 5.1
Sequence: CGCACCATGTTTGTGCA
Locus tag: Lcho_3581
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
Locus tag: Lcho_3582
Name: ntrZ
Funciton: Conserved hypothetical signal peptide protein
Locus tag: Lcho_3583
Name: ntrB
Funciton: putative nitrogen regulation protein NR(II)
Locus tag: Lcho_3584
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
glnA
Glutamine synthetase type I (EC 6.3.1.2)
ntrZ
Conserved hypothetical signal peptide protein
ntrB
putative nitrogen regulation protein NR(II)
ntrC
Nitrogen regulation protein NR(I), Fis family

Position: -300
Score: 4.4
Sequence: TGCACGCCCATGGTGCG
Locus tag: Lcho_3843
Name: nrtA
Funciton: Nitrate ABC transporter, substrate-binding component
Locus tag: Lcho_3842
Name: nrtB
Funciton: Nitrate ABC transporter, permease component
Locus tag: Lcho_3841
Name: nrtC
Funciton: Nitrate ABC transporter, ATP-binding component
nrtA
Nitrate ABC transporter, substrate-binding component
nrtB
Nitrate ABC transporter, permease component
nrtC
Nitrate ABC transporter, ATP-binding component
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