Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NtrC in Variovorax paradoxus S110

Properties
Regulator type: Transcription factor
TF locus tag: Vapar_1635
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Regulog: NtrC - Comamonadaceae
Statistics of regulated genes:
- Genes 14
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 52 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -139
Score: 5.7
Sequence: TGCACCAATTTGGTGAT
Locus tag: Vapar_1632
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
Locus tag: Vapar_1633
Name: ntrZ
Funciton: Conserved hypothetical signal peptide protein
Locus tag: Vapar_1634
Name: ntrB
Funciton: putative nitrogen regulation protein NR(II)
Locus tag: Vapar_1635
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
glnA
Glutamine synthetase type I (EC 6.3.1.2)
ntrZ
Conserved hypothetical signal peptide protein
ntrB
putative nitrogen regulation protein NR(II)
ntrC
Nitrogen regulation protein NR(I), Fis family

Position: -166
Score: 4.6
Sequence: AGCACCGCTTTGGTGAG
Locus tag: Vapar_3526
Name: narK
Funciton: Nitrate/nitrite antiporter
narK
Nitrate/nitrite antiporter

Position: -313
Score: 4.3
Sequence: CGCACAACAAGCGTGCA
Locus tag: Vapar_3522
Name: nrtA
Funciton: Nitrate ABC transporter, substrate-binding component
Locus tag: Vapar_3523
Name: nrtB
Funciton: Nitrate ABC transporter, permease component
Locus tag: Vapar_3524
Name: nrtC
Funciton: Nitrate ABC transporter, ATP-binding component
nrtA
Nitrate ABC transporter, substrate-binding component
nrtB
Nitrate ABC transporter, permease component
nrtC
Nitrate ABC transporter, ATP-binding component

Position: -189
Score: 4.6
Sequence: AGCACTGTTTTGGTGAG
Locus tag: Vapar_2849
Name: nasD
Funciton: Nitrite reductase, large subunit (EC 1.7.1.4)
Locus tag: Vapar_2848
Name: nasE
Funciton: Nitrite reductase, small subunit (EC 1.7.1.4)
Locus tag: Vapar_2847
Name: cysG
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
nasD
Nitrite reductase, large subunit (EC 1.7.1.4)
nasE
Nitrite reductase, small subunit (EC 1.7.1.4)
cysG
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)

Position: -207
Score: 4.9
Sequence: CTCACCATTGTGGTGCG
Locus tag: Vapar_0217
Name: CHP02001
Funciton: Conserved hypothetical protein CHP02001
Locus tag: Vapar_0218
Name: glnK
Funciton: Nitrogen regulatory protein P-II
Locus tag: Vapar_0219
Name: amtB
Funciton: Ammonium transporter
CHP02001
Conserved hypothetical protein CHP02001
glnK
Nitrogen regulatory protein P-II
amtB
Ammonium transporter
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