Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NtrC in Rhodoferax ferrireducens DSM 15236

Properties
Regulator type: Transcription factor
TF locus tag: Rfer_2982
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Regulog: NtrC - Comamonadaceae
Statistics of regulated genes:
- Genes 11
- Operons 3
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 52 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -236
Score: 4.7
Sequence: GGCCCTGAATTGGTGCA
Position: -184
Score: 5.3
Sequence: CGCACTTAATTGGTGCT
Locus tag: Rfer_2979
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
Locus tag: Rfer_2980
Name: ntrZ
Funciton: Conserved hypothetical signal peptide protein
Locus tag: Rfer_2981
Name: ntrB
Funciton: putative nitrogen regulation protein NR(II)
Locus tag: Rfer_2982
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
glnA
Glutamine synthetase type I (EC 6.3.1.2)
ntrZ
Conserved hypothetical signal peptide protein
ntrB
putative nitrogen regulation protein NR(II)
ntrC
Nitrogen regulation protein NR(I), Fis family

Position: -315
Score: 5.1
Sequence: TGCACAAAACTGGTGCC
Locus tag: Rfer_2554
Name: nrtA
Funciton: Nitrate ABC transporter, substrate-binding component
Locus tag: Rfer_2555
Name: nrtB
Funciton: Nitrate ABC transporter, permease component
Locus tag: Rfer_2556
Name: nrtC
Funciton: Nitrate ABC transporter, ATP-binding component
Locus tag: Rfer_2557
Name: nasD
Funciton: Nitrite reductase, large subunit (EC 1.7.1.4)
Locus tag: Rfer_2558
Name: nasE
Funciton: Nitrite reductase, small subunit (EC 1.7.1.4)
nrtA
Nitrate ABC transporter, substrate-binding component
nrtB
Nitrate ABC transporter, permease component
nrtC
Nitrate ABC transporter, ATP-binding component
nasD
Nitrite reductase, large subunit (EC 1.7.1.4)
nasE
Nitrite reductase, small subunit (EC 1.7.1.4)

Position: -203
Score: 5
Sequence: TGCACCAAGTATGTGCG
Locus tag: Rfer_0472
Name: glnK
Funciton: Nitrogen regulatory protein P-II
Locus tag: Rfer_0473
Name: amtB
Funciton: Ammonium transporter
glnK
Nitrogen regulatory protein P-II
amtB
Ammonium transporter
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