Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NtrC in Polaromonas naphthalenivorans CJ2

Properties
Regulator type: Transcription factor
TF locus tag: Pnap_2777
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Regulog: NtrC - Comamonadaceae
Statistics of regulated genes:
- Genes 10
- Operons 3
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 52 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -250
Score: 4.6
Sequence: GGCCCTGAATTGGTGCG
Position: -200
Score: 5
Sequence: CGCACTTTTTTGGTGCT
Locus tag: Pnap_2780
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
Locus tag: Pnap_2779
Name: ntrZ
Funciton: Conserved hypothetical signal peptide protein
Locus tag: Pnap_2778
Name: ntrB
Funciton: putative nitrogen regulation protein NR(II)
Locus tag: Pnap_2777
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
glnA
Glutamine synthetase type I (EC 6.3.1.2)
ntrZ
Conserved hypothetical signal peptide protein
ntrB
putative nitrogen regulation protein NR(II)
ntrC
Nitrogen regulation protein NR(I), Fis family

Position: -334
Score: 4.7
Sequence: GGCGCCGAAATGGTGCA
Locus tag: Pnap_1414
Name: nrtA
Funciton: Nitrate ABC transporter, substrate-binding component
Locus tag: Pnap_1413
Name: nrtB
Funciton: Nitrate ABC transporter, permease component
Locus tag: Pnap_1412
Name: nrtC
Funciton: Nitrate ABC transporter, ATP-binding component
Locus tag: Pnap_1411
Name: narK
Funciton: Nitrate/nitrite antiporter
nrtA
Nitrate ABC transporter, substrate-binding component
nrtB
Nitrate ABC transporter, permease component
nrtC
Nitrate ABC transporter, ATP-binding component
narK
Nitrate/nitrite antiporter

Position: -319
Score: 4.7
Sequence: TGCATCAAAGTTGTGCA
Position: -295
Score: 4.5
Sequence: TGCATCATGATGGTGCG
Locus tag: Pnap_0120
Name: glnK
Funciton: Nitrogen regulatory protein P-II
Locus tag: Pnap_0121
Name: amtB
Funciton: Ammonium transporter
glnK
Nitrogen regulatory protein P-II
amtB
Ammonium transporter
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD