Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NtrC in Delftia acidovorans SPH-1

Properties
Regulator type: Transcription factor
TF locus tag: Daci_4999
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Regulog: NtrC - Comamonadaceae
Statistics of regulated genes:
- Genes 14
- Operons 4
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 52 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -286
Score: 5.8
Sequence: TGCACTCATTTGGTGCA
Position: -214
Score: 5.6
Sequence: TGCACCGATTTGGTGAA
Position: -84
Score: 4.7
Sequence: TGCACTCAATGGATGCA
Locus tag: Daci_5002
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
Locus tag: Daci_5001
Name: ntrZ
Funciton: Conserved hypothetical signal peptide protein
Locus tag: Daci_5000
Name: ntrB
Funciton: putative nitrogen regulation protein NR(II)
Locus tag: Daci_4999
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
glnA
Glutamine synthetase type I (EC 6.3.1.2)
ntrZ
Conserved hypothetical signal peptide protein
ntrB
putative nitrogen regulation protein NR(II)
ntrC
Nitrogen regulation protein NR(I), Fis family

Position: -252
Score: 4.6
Sequence: CGCACCGCTTTGATGCA
Locus tag: Daci_2371
Name: nasD
Funciton: Nitrite reductase, large subunit (EC 1.7.1.4)
Locus tag: Daci_2370
Name: nasA
Funciton: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
Locus tag: Daci_2369
Name: ybiB
Funciton: Conserved hypothetical protein
Locus tag: Daci_2368
Name: cysG
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
nasD
Nitrite reductase, large subunit (EC 1.7.1.4)
nasA
Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
ybiB
Conserved hypothetical protein
cysG
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)

Position: -277
Score: 4.9
Sequence: AGCACCGACTTGGTGCC
Locus tag: Daci_2377
Name: nrtA
Funciton: Nitrate ABC transporter, substrate-binding component
Locus tag: Daci_2376
Name: nrtB
Funciton: Nitrate ABC transporter, permease component
Locus tag: Daci_2375
Name: nrtC
Funciton: Nitrate ABC transporter, ATP-binding component
nrtA
Nitrate ABC transporter, substrate-binding component
nrtB
Nitrate ABC transporter, permease component
nrtC
Nitrate ABC transporter, ATP-binding component

Position: -208
Score: 5.4
Sequence: TGCACTATCTTGGTGCA
Position: -136
Score: 4.7
Sequence: TGCACAAAGCCGGTGCA
Locus tag: Daci_0301
Name: CHP02001
Funciton: Conserved hypothetical protein CHP02001
Locus tag: Daci_0302
Name: glnK
Funciton: Nitrogen regulatory protein P-II
Locus tag: Daci_0303
Name: amtB
Funciton: Ammonium transporter
CHP02001
Conserved hypothetical protein CHP02001
glnK
Nitrogen regulatory protein P-II
amtB
Ammonium transporter
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Regulated Genes [ Tab delimited format ] DOWNLOAD
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