Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of SiaR in Photobacterium profundum SS9

Properties
Regulator type: Transcription factor
TF locus tag: PBPRA2286
Regulator family: RpiR
Regulation mode: repressor
Biological process: Sialic acid utilization
Effector: Glucosamine-6-phosphate
Regulog: SiaR - Vibrionales
Statistics of regulated genes:
- Genes 9
- Operons 4
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 17 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -118
Score: 4.8
Sequence: TTTGAAGAAAACCTTCATA
Locus tag: PBPRA2281
Name: siaP
Funciton: Sialic acid-binding periplasmic protein SiaP (N-acetylneuraminic-binding protein) (Neu5Ac-binding protein)(Extracytoplasmic solute receptor protein siaP)
Locus tag: PBPRA2280
Name: siaS
Funciton: TRAP-type transport system, small permease component, N-acetylneuraminate transporter
Locus tag: PBPRA2279
Name: siaT
Funciton: TRAP-type transport system, large permease component, N-acetylneuraminate transporter / TRAP-type transport system, small permease component, N-acetylneuraminate transporter
siaP
Sialic acid-binding periplasmic protein SiaP (N-acetylneuraminic-binding protein) (Neu5Ac-binding protein)(Extracytoplasmic solute receptor protein siaP)
siaS
TRAP-type transport system, small permease component, N-acetylneuraminate transporter
siaT
TRAP-type transport system, large permease component, N-acetylneuraminate transporter / TRAP-type transport system, small permease component, N-acetylneuraminate transporter

Position: -226
Score: 5
Sequence: TATGGAGTTAGGCTCCATT
Position: -105
Score: 5.2
Sequence: GTTGAAGTAAAACTTCATC
Position: -78
Score: 5.5
Sequence: GGTGGAGTTAAACTTCATT
Locus tag: PBPRA2285
Name: nanE
Funciton: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)
Locus tag: PBPRA2284
Name: nanK
Funciton: N-acetylmannosamine kinase (EC 2.7.1.60)
Locus tag: PBPRA2283
Name: nanT
Funciton: Sialic acid transporter (permease) NanT
Locus tag: PBPRA2282
Name: yhcH
Funciton: Uncharacterized protein yhcH
nanE
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)
nanK
N-acetylmannosamine kinase (EC 2.7.1.60)
nanT
Sialic acid transporter (permease) NanT
yhcH
Uncharacterized protein yhcH

Position: -83
Score: 5.3
Sequence: TATGGAGTTTAGCTTCACA
Locus tag: PBPRA2286
Name: siaR
Funciton: Sialic acid utilization regulator, RpiR family
siaR
Sialic acid utilization regulator, RpiR family

Position: -38
Score: 5.1
Sequence: TGTGAAGTTTAACTTCGCT
Locus tag: PBPRA2287
Name: nanA
Funciton: N-acetylneuraminate lyase (EC 4.1.3.3)
nanA
N-acetylneuraminate lyase (EC 4.1.3.3)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD