Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of IscR in Roseovarius nubinhibens ISM

Properties
Regulator type: Transcription factor
TF locus tag: ISM_16015
Regulator family: Rrf2
Regulation mode: repressor (activator)
Biological process: Iron-sulfur cluster biogenesis; Iron homeostasis
Effector: Iron-sulfur cluster redox state; Iron ion, (Fe2+)
Regulog: IscR - Rhodobacterales
Statistics of regulated genes:
- Genes 19
- Operons 9
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 125 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -46
Score: 4.5
Sequence: CCCGAGTGAATTGATCGGA
Locus tag: ISM_15910
Name: fbpC
Funciton: Ferric iron ABC transporter, ATP-binding protein
fbpC
Ferric iron ABC transporter, ATP-binding protein

Position: -132
Score: 4
Sequence: TCCGACTATTTCATTTAGG
Locus tag: ISM_04265
Name: Mlr1156
Funciton: Mlr1156 protein
Locus tag: ISM_04260
Name: exbB
Funciton: Ferric siderophore transport system, biopolymer transport protein ExbB
Locus tag: ISM_04255
Name: exbD1
Funciton: Ferric siderophore transport system, periplasmic binding protein ExbD
Locus tag: ISM_04250
Name: exbD2
Funciton: Ferric siderophore transport system, periplasmic binding protein ExbD
Locus tag: ISM_04245
Name: tonB
Funciton: Ferric siderophore transport system, periplasmic binding protein TonB
Mlr1156
Mlr1156 protein
exbB
Ferric siderophore transport system, biopolymer transport protein ExbB
exbD1
Ferric siderophore transport system, periplasmic binding protein ExbD
exbD2
Ferric siderophore transport system, periplasmic binding protein ExbD
tonB
Ferric siderophore transport system, periplasmic binding protein TonB

Position: -117
Score: 4.9
Sequence: CCTGAGTAAAAGACTCAGG
Locus tag: ISM_00940
Name: OB2597_05460
Funciton: TonB-dependent hemin, ferrichrome receptor
OB2597_05460
TonB-dependent hemin, ferrichrome receptor

Position: -100
Score: 4.1
Sequence: CTTGACTTTTTGCCTCAGG
Locus tag: ISM_05670
Name: ISM_05670
Funciton: Outer membrane receptor proteins, mostly Fe transport
ISM_05670
Outer membrane receptor proteins, mostly Fe transport

Position: -81
Score: 4.9
Sequence: TCCGACTCTTTTTGTCAGA
Locus tag: ISM_15940
Name: SKA53_15391
Funciton: hypothetical protein
Locus tag: ISM_15945
Name: TM1040_2633
Funciton: hypothetical protein
SKA53_15391
hypothetical protein
TM1040_2633
hypothetical protein

Position: -157
Score: 4.4
Sequence: CTTGACAGTTTTAGTCTGA
Locus tag: ISM_04235
Name: hmuR
Funciton: TonB-dependent hemin , ferrichrome receptor
hmuR
TonB-dependent hemin , ferrichrome receptor

Position: -138
Score: 5.4
Sequence: CTTGACTAAATTAGTCGGA
Position: -104
Score: 5.2
Sequence: TCCGAGTATTTTAGTCGGA
Locus tag: ISM_05125
Name: fbpA
Funciton: Ferric iron ABC transporter, iron-binding protein
fbpA
Ferric iron ABC transporter, iron-binding protein

Position: -82
Score: 4.9
Sequence: CCCGAGTATTTCACTCAGG
Locus tag: ISM_04365
Name: irpA
Funciton: Iron-regulated protein A precursor
Locus tag: ISM_04360
Name: COG3488
Funciton: Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites
Locus tag: ISM_04355
Name: COG3489
Funciton: Predicted periplasmic lipoprotein
Locus tag: ISM_04350
Name: COG3490
Funciton: Uncharacterised conserved protein UCP028101
irpA
Iron-regulated protein A precursor
COG3488
Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites
COG3489
Predicted periplasmic lipoprotein
COG3490
Uncharacterised conserved protein UCP028101

Position: -205
Score: 5.2
Sequence: TCTGACTAAAAAAGTCGGA
Position: -178
Score: 4.8
Sequence: TCTGACAGAATAAATCAGA
Locus tag: ISM_01000
Name: hemP
Funciton: Hemin uptake protein HemP
Locus tag: ISM_00995
Name: bfd
Funciton: Bacterioferritin-associated ferredoxin
Locus tag: ISM_00990
Name: bfr
Funciton: Bacterioferritin (cytochrome b1)
hemP
Hemin uptake protein HemP
bfd
Bacterioferritin-associated ferredoxin
bfr
Bacterioferritin (cytochrome b1)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD