Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of PedR in Synechocystis sp. PCC 6803

Properties
Regulator type: Transcription factor
TF locus tag: ssl0564
Regulator family: LuxR
Regulation mode: repressor (activator)
Biological process: Photosynthesis; Carbon fixation
Effector: Trx, thioredoxin protein
Regulog: PedR - Cyanobacteria
Statistics of regulated genes:
- Genes 8
- Operons 8
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 56 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -20
Score: 4.3
Sequence: AGGTATTTATTCTT
Locus tag: slr1291
Name: ndhD2
Funciton: NADH dehydrogenase subunit
ndhD2
NADH dehydrogenase subunit

Position: -18
Score: 4.8
Sequence: AAGCATAAATACCT
Locus tag: slr1957
Name: slr1957
Funciton: Conserved hypothetical protein
slr1957
Conserved hypothetical protein

Position: -182
Score: 3.4
Sequence: AAGCATTAAGAATT
Locus tag: slr0772
Name: chlB
Funciton: Light-independent protochlorophyllide reductase subunit B
chlB
Light-independent protochlorophyllide reductase subunit B

Position: -196
Score: 4.8
Sequence: AAGTAACTATACCC
Position: -178
Score: 4
Sequence: AAGTTATTTTATTT
Locus tag: slr0749
Name: chlL
Funciton: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein
chlL
Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein

Position: -27
Score: 3.5
Sequence: GAGTTGAAATACTT
Locus tag: sll0807
Name: rpe
Funciton: Ribulose-phosphate 3-epimerase
rpe
Ribulose-phosphate 3-epimerase

Position: -349
Score: 4.8
Sequence: GAGTAAATATACCT
Locus tag: sll0296
Name: sll0296
Funciton: Conserved hypothetical protein
sll0296
Conserved hypothetical protein

Position: -28
Score: 4.8
Sequence: GAGTAAATATACCT
Locus tag: ssl0564
Name: pedR
Funciton: Thioredoxin status sensitive transcription regulator, LuxR family
pedR
Thioredoxin status sensitive transcription regulator, LuxR family

Position: -242
Score: 3.5
Sequence: AATTAAAATTAATC
Locus tag: slr0750
Name: chlN
Funciton: Light-independent protochlorophyllide reductase subunit N
chlN
Light-independent protochlorophyllide reductase subunit N
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