Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of CcmR in Synechocystis sp. PCC 6803

Properties
Regulator type: Transcription factor
TF locus tag: sll0030, sll1594
Regulator family: LysR
Regulation mode: repressor
Biological process: Carbon dioxide fixation
Effector:
Regulog: CcmR - Cyanobacteria
Statistics of regulated genes:
- Genes 31
- Operons 8
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 72 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -125
Score: 3.8
Sequence: ATAGAATCTATGCAAT
Locus tag: slr2006
Name: mnhC
Funciton: Na/H antiporter, subunit C
Locus tag: slr2007
Name: mnhD
Funciton: Na/H antiporter, subunit D
Locus tag: slr2008
Name: mnhC
Funciton: Na/H antiporter, subunit C
Locus tag: slr2009
Name: mnhD
Funciton: Na/H antiporter, subunit D
Locus tag: slr2010
Name: mnhE
Funciton: Predicted Na/H antiporter, subunit E
Locus tag: ssr3409
Name: mnhF
Funciton: Na/H antiporter, subunit F
Locus tag: ssr3410
Name: mnhG
Funciton: Na/H antiporter, subunit G
Locus tag: slr2011
Name: slr2011
Funciton: Predicted subunit of the Na/H antiporter
Locus tag: slr2012
Name: mnhB
Funciton: Na/H antiporter, subunit B
mnhC
Na/H antiporter, subunit C
mnhD
Na/H antiporter, subunit D
mnhC
Na/H antiporter, subunit C
mnhD
Na/H antiporter, subunit D
mnhE
Predicted Na/H antiporter, subunit E
mnhF
Na/H antiporter, subunit F
mnhG
Na/H antiporter, subunit G
slr2011
Predicted subunit of the Na/H antiporter
mnhB
Na/H antiporter, subunit B

Position: -76
Score: 4.4
Sequence: CTAGAATATTCTCTAT
Position: -45
Score: 5.3
Sequence: ATAGACTAAAGACTAT
Locus tag: sll0834
Name: bicA
Funciton: Bicarbonate transporter
bicA
Bicarbonate transporter

Position: -107
Score: 4.3
Sequence: ATTGTGATTGGTCTAT
Locus tag: slr2007
Name: mnhD
Funciton: Na/H antiporter, subunit D
Locus tag: slr2008
Name: mnhC
Funciton: Na/H antiporter, subunit C
Locus tag: slr2009
Name: mnhD
Funciton: Na/H antiporter, subunit D
Locus tag: slr2010
Name: mnhE
Funciton: Predicted Na/H antiporter, subunit E
Locus tag: ssr3409
Name: mnhF
Funciton: Na/H antiporter, subunit F
Locus tag: ssr3410
Name: mnhG
Funciton: Na/H antiporter, subunit G
Locus tag: slr2011
Name: slr2011
Funciton: Predicted subunit of the Na/H antiporter
Locus tag: slr2012
Name: mnhB
Funciton: Na/H antiporter, subunit B
mnhD
Na/H antiporter, subunit D
mnhC
Na/H antiporter, subunit C
mnhD
Na/H antiporter, subunit D
mnhE
Predicted Na/H antiporter, subunit E
mnhF
Na/H antiporter, subunit F
mnhG
Na/H antiporter, subunit G
slr2011
Predicted subunit of the Na/H antiporter
mnhB
Na/H antiporter, subunit B

Position: -208
Score: 4.5
Sequence: TTGGATATTTATCTAT
Locus tag: slr0040
Name: cmpA
Funciton: Bicarbontate ABC transporter, substrate-binding protein
Locus tag: slr0041
Name: cmpB
Funciton: Bicarbontate ABC transporter, permease protein
Locus tag: slr0042
Name: porB
Funciton: Low-CO2 inducible, outer membrane bicarbonate porin
Locus tag: slr0043
Name: cmpC
Funciton: Bicarbontate ABC transporter, ATP-binding protein 1
Locus tag: slr0044
Name: cmpD
Funciton: Bicarbontate ABC transporter, ATP-binding protein 2
cmpA
Bicarbontate ABC transporter, substrate-binding protein
cmpB
Bicarbontate ABC transporter, permease protein
porB
Low-CO2 inducible, outer membrane bicarbonate porin
cmpC
Bicarbontate ABC transporter, ATP-binding protein 1
cmpD
Bicarbontate ABC transporter, ATP-binding protein 2

Position: -71
Score: 5.6
Sequence: ATAGACTTTTGACTAT
Locus tag: slr2094
Name: glpX
Funciton: Fructose-1,6-bisphosphatase II
glpX
Fructose-1,6-bisphosphatase II

Position: -182
Score: 4.7
Sequence: ATAGACTTTAGCTTAT
Position: -136
Score: 5
Sequence: ATAGACAAGAGTCTAT
Locus tag: slr1512
Name: sbtA
Funciton: High-affinity, low-flux sodium dependent bicarbonate transporter
Locus tag: slr1513
Name: sbtB
Funciton: Predicted membrane protein
sbtA
High-affinity, low-flux sodium dependent bicarbonate transporter
sbtB
Predicted membrane protein

Position: -204
Score: 3.9
Sequence: ATTGTCGCTTGACTAT
Locus tag: sll1732
Name: ndhF3
Funciton: NADH dehydrogenase subunit F
Locus tag: sll1733
Name: ndhD3
Funciton: NADH dehydrogenase subunit D
Locus tag: sll1734
Name: cupA
Funciton: CO2 uptake protein
Locus tag: sll1735
Name: cupS
Funciton: CO2 uptake transporter, small subunit
ndhF3
NADH dehydrogenase subunit F
ndhD3
NADH dehydrogenase subunit D
cupA
CO2 uptake protein
cupS
CO2 uptake transporter, small subunit

Position: -240
Score: 4.7
Sequence: ATTGGCTTTATTCTAT
Position: -179
Score: 4.8
Sequence: ATAGCCATAGGTCTAT
Locus tag: sll1594
Name: ccmR
Funciton: Carbon assimilation transcriptional regulator, LysR family
ccmR
Carbon assimilation transcriptional regulator, LysR family
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD