Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of CcmR in Synechococcus sp. PCC 7002

Properties
Regulator type: Transcription factor
TF locus tag: SYNPCC7002_A0171
Regulator family: LysR
Regulation mode: repressor
Biological process: Carbon dioxide fixation
Effector:
Regulog: CcmR - Cyanobacteria
Statistics of regulated genes:
- Genes 18
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 72 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -294
Score: 4.4
Sequence: ATAGTCGAAAGACTAT
Locus tag: SYNPCC7002_G0011
Name: porB
Funciton: Low-CO2 inducible, outer membrane bicarbonate porin
porB
Low-CO2 inducible, outer membrane bicarbonate porin

Position: -134
Score: 4.9
Sequence: ATAGAGCTAAATCTAT
Locus tag: SYNPCC7002_A0470
Name: sbtA
Funciton: High-affinity, low-flux sodium dependent bicarbonate transporter
sbtA
High-affinity, low-flux sodium dependent bicarbonate transporter

Position: -123
Score: 5.2
Sequence: ATAGATATTAAACTAT
Locus tag: SYNPCC7002_A2371
Name: bicA
Funciton: Bicarbonate transporter
Locus tag: SYNPCC7002_A2372
Name: nhaS
Funciton: Predicted sodium/hydrogen exchanger
Locus tag: SYNPCC7002_A2373
Name: mnhC
Funciton: Na/H antiporter, subunit C
Locus tag: SYNPCC7002_A2374
Name: mnhD
Funciton: Na/H antiporter, subunit D
Locus tag: SYNPCC7002_A2375
Name: mnhD
Funciton: Na/H antiporter, subunit D
Locus tag: SYNPCC7002_A2376
Name: mnhE
Funciton: Predicted Na/H antiporter, subunit E
Locus tag: SYNPCC7002_A2377
Name: mnhF
Funciton: Na/H antiporter, subunit F
Locus tag: SYNPCC7002_A2378
Name: mnhG
Funciton: Na/H antiporter, subunit G
Locus tag: SYNPCC7002_A2379
Name: slr2011
Funciton: Predicted subunit of the Na/H antiporter
Locus tag: SYNPCC7002_A2380
Name: mnhB
Funciton: Na/H antiporter, subunit B
bicA
Bicarbonate transporter
nhaS
Predicted sodium/hydrogen exchanger
mnhC
Na/H antiporter, subunit C
mnhD
Na/H antiporter, subunit D
mnhD
Na/H antiporter, subunit D
mnhE
Predicted Na/H antiporter, subunit E
mnhF
Na/H antiporter, subunit F
mnhG
Na/H antiporter, subunit G
slr2011
Predicted subunit of the Na/H antiporter
mnhB
Na/H antiporter, subunit B

Position: -131
Score: 4.6
Sequence: ATAGACTTAAAGATAT
Position: -99
Score: 4.2
Sequence: ATAGAGTCTTGTCTTT
Locus tag: SYNPCC7002_A0472
Name: sbtB
Funciton: Predicted membrane protein
sbtB
Predicted membrane protein

Position: -63
Score: 5
Sequence: ATTGACTCTAGTCTAT
Locus tag: SYNPCC7002_A0171
Name: ccmR
Funciton: Carbon assimilation transcriptional regulator, LysR family
Locus tag: SYNPCC7002_A0172
Name: ndhF3
Funciton: NADH dehydrogenase subunit F
Locus tag: SYNPCC7002_A0173
Name: ndhD3
Funciton: NADH dehydrogenase subunit D
Locus tag: SYNPCC7002_A0174
Name: cupA
Funciton: CO2 uptake protein
Locus tag: SYNPCC7002_A0175
Name: cupS
Funciton: CO2 uptake transporter, small subunit
ccmR
Carbon assimilation transcriptional regulator, LysR family
ndhF3
NADH dehydrogenase subunit F
ndhD3
NADH dehydrogenase subunit D
cupA
CO2 uptake protein
cupS
CO2 uptake transporter, small subunit
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