Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of CcmR in Nostoc sp. PCC 7120

Properties
Regulator type: Transcription factor
TF locus tag: all0862
Regulator family: LysR
Regulation mode: repressor
Biological process: Carbon dioxide fixation
Effector:
Regulog: CcmR - Cyanobacteria
Statistics of regulated genes:
- Genes 6
- Operons 4
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 72 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -245
Score: 5.9
Sequence: ATAGATTTTTGTCTAT
Locus tag: alr4156
Name: ndhF3
Funciton: NADH dehydrogenase subunit F
Locus tag: alr4157
Name: ndhD3
Funciton: NADH dehydrogenase subunit D
ndhF3
NADH dehydrogenase subunit F
ndhD3
NADH dehydrogenase subunit D

Position: 34
Score: 4.4
Sequence: ATAGTTTTAAAACTCT
Locus tag: alr1320
Name: cupS
Funciton: CO2 uptake transporter, small subunit
cupS
CO2 uptake transporter, small subunit

Position: -285
Score: 5.8
Sequence: ATAGATTTTTATCTAT
Position: -146
Score: 5.8
Sequence: ATAGATTTTTATCTAT
Position: -72
Score: 4.9
Sequence: CTAGTCTTATATCTAT
Locus tag: all0862
Name: ccmR
Funciton: Carbon assimilation transcriptional regulator, LysR family
ccmR
Carbon assimilation transcriptional regulator, LysR family

Position: -191
Score: 4.6
Sequence: ATAGAATTTTGGCTCT
Position: -173
Score: 4.8
Sequence: ATAAATATTGATCTAT
Locus tag: all2134
Name: sbtA
Funciton: High-affinity, low-flux sodium dependent bicarbonate transporter
Locus tag: all2133
Name: sbtB
Funciton: Predicted membrane protein
sbtA
High-affinity, low-flux sodium dependent bicarbonate transporter
sbtB
Predicted membrane protein
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