Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of CcmR in Cyanothece sp. PCC 8801

Properties
Regulator type: Transcription factor
TF locus tag: PCC8801_3406
Regulator family: LysR
Regulation mode: repressor
Biological process: Carbon dioxide fixation
Effector:
Regulog: CcmR - Cyanobacteria
Statistics of regulated genes:
- Genes 16
- Operons 7
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 72 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -74
Score: 5
Sequence: ATAGACTTTTGACTAA
Locus tag: PCC8801_3646
Name: glpX
Funciton: Fructose-1,6-bisphosphatase II
glpX
Fructose-1,6-bisphosphatase II

Position: -174
Score: 5.4
Sequence: ATAGATAAATGTCTAT
Locus tag: PCC8801_1249
Name: sbtA
Funciton: High-affinity, low-flux sodium dependent bicarbonate transporter
Locus tag: PCC8801_1248
Name: sbtB
Funciton: Predicted membrane protein
sbtA
High-affinity, low-flux sodium dependent bicarbonate transporter
sbtB
Predicted membrane protein

Position: -71
Score: 5.6
Sequence: ATAGACTAAAGTCTAT
Position: -8
Score: 5
Sequence: ATTGTTATATGTCTAT
Locus tag: PCC8801_4247
Name: ndhF3
Funciton: NADH dehydrogenase subunit F
Locus tag: PCC8801_4248
Name: ecaB2
Funciton: Periplasmic carbonic anhydrase
Locus tag: PCC8801_4249
Name: ndhD3
Funciton: NADH dehydrogenase subunit D
Locus tag: PCC8801_4250
Name: cupA
Funciton: CO2 uptake protein
ndhF3
NADH dehydrogenase subunit F
ecaB2
Periplasmic carbonic anhydrase
ndhD3
NADH dehydrogenase subunit D
cupA
CO2 uptake protein

Position: -144
Score: 4.4
Sequence: ATAGAATTTAATCAAA
Position: -112
Score: 4.8
Sequence: ATTGTATTTAATCTAT
Locus tag: PCC8801_3406
Name: ccmR
Funciton: Carbon assimilation transcriptional regulator, LysR family
ccmR
Carbon assimilation transcriptional regulator, LysR family

Position: -268
Score: 4.5
Sequence: ATACATATTAAGCTAT
Locus tag: PCC8801_3521
Name: cmpA
Funciton: Bicarbontate ABC transporter, substrate-binding protein
Locus tag: PCC8801_3520
Name: cmpB
Funciton: Bicarbontate ABC transporter, permease protein
Locus tag: PCC8801_3519
Name: cmpC
Funciton: Bicarbontate ABC transporter, ATP-binding protein 1
Locus tag: PCC8801_3518
Name: cmpD
Funciton: Bicarbontate ABC transporter, ATP-binding protein 2
cmpA
Bicarbontate ABC transporter, substrate-binding protein
cmpB
Bicarbontate ABC transporter, permease protein
cmpC
Bicarbontate ABC transporter, ATP-binding protein 1
cmpD
Bicarbontate ABC transporter, ATP-binding protein 2

Position: -56
Score: 4.8
Sequence: ATAGGCTTTAAGCTAT
Position: -24
Score: 4.7
Sequence: ATAGTTTTTTGTATAT
Locus tag: PCC8801_2762
Name: mnhC
Funciton: Na/H antiporter, subunit C
Locus tag: PCC8801_2761
Name: mnhD
Funciton: Na/H antiporter, subunit D
Locus tag: PCC8801_2760
Name: mnhE
Funciton: Predicted Na/H antiporter, subunit E
mnhC
Na/H antiporter, subunit C
mnhD
Na/H antiporter, subunit D
mnhE
Predicted Na/H antiporter, subunit E

Position: -46
Score: 5.2
Sequence: ATAGCTTTTAATCTAT
Position: -14
Score: 4.2
Sequence: ATAGAATAAATACAAT
Locus tag: PCC8801_1398
Name: cce_1687
Funciton: Predicted membrane protein (COG3431)
cce_1687
Predicted membrane protein (COG3431)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
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