Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of CcmR in Cyanothece sp. PCC 7425

Properties
Regulator type: Transcription factor
TF locus tag: Cyan7425_3855
Regulator family: LysR
Regulation mode: repressor
Biological process: Carbon dioxide fixation
Effector:
Regulog: CcmR - Cyanobacteria
Statistics of regulated genes:
- Genes 15
- Operons 4
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 72 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -121
Score: 4.7
Sequence: ATTTATAAATATCTAT
Locus tag: Cyan7425_3542
Name: mnhC
Funciton: Na/H antiporter, subunit C
Locus tag: Cyan7425_3543
Name: mnhD
Funciton: Na/H antiporter, subunit D
Locus tag: Cyan7425_3544
Name: mnhE
Funciton: Predicted Na/H antiporter, subunit E
Locus tag: Cyan7425_3545
Name: mnhF
Funciton: Na/H antiporter, subunit F
Locus tag: Cyan7425_3546
Name: mnhG
Funciton: Na/H antiporter, subunit G
Locus tag: Cyan7425_3547
Name: slr2011
Funciton: Predicted subunit of the Na/H antiporter
Locus tag: Cyan7425_3548
Name: mnhB
Funciton: Na/H antiporter, subunit B
mnhC
Na/H antiporter, subunit C
mnhD
Na/H antiporter, subunit D
mnhE
Predicted Na/H antiporter, subunit E
mnhF
Na/H antiporter, subunit F
mnhG
Na/H antiporter, subunit G
slr2011
Predicted subunit of the Na/H antiporter
mnhB
Na/H antiporter, subunit B

Position: -94
Score: 4.2
Sequence: TTTTACCTATGTCTAT
Locus tag: Cyan7425_5063
Name: sbtA
Funciton: High-affinity, low-flux sodium dependent bicarbonate transporter
Locus tag: Cyan7425_5062
Name: sbtB
Funciton: Predicted membrane protein
sbtA
High-affinity, low-flux sodium dependent bicarbonate transporter
sbtB
Predicted membrane protein

Position: -286
Score: 5.2
Sequence: ATAGACTTAGGGCTAT
Locus tag: Cyan7425_4925
Name: cmpA
Funciton: Bicarbontate ABC transporter, substrate-binding protein
Locus tag: Cyan7425_4924
Name: cmpB
Funciton: Bicarbontate ABC transporter, permease protein
Locus tag: Cyan7425_4923
Name: cmpC
Funciton: Bicarbontate ABC transporter, ATP-binding protein 1
Locus tag: Cyan7425_4922
Name: cmpD
Funciton: Bicarbontate ABC transporter, ATP-binding protein 2
Locus tag: Cyan7425_4921
Name: cce_1687
Funciton: Predicted membrane protein (COG3431)
cmpA
Bicarbontate ABC transporter, substrate-binding protein
cmpB
Bicarbontate ABC transporter, permease protein
cmpC
Bicarbontate ABC transporter, ATP-binding protein 1
cmpD
Bicarbontate ABC transporter, ATP-binding protein 2
cce_1687
Predicted membrane protein (COG3431)

Position: -93
Score: 5.9
Sequence: ATAGATTTTTGTCTAT
Locus tag: Cyan7425_3855
Name: ccmR
Funciton: Carbon assimilation transcriptional regulator, LysR family
ccmR
Carbon assimilation transcriptional regulator, LysR family
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD