Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of CcmR in Cyanothece sp. ATCC 51142

Properties
Regulator type: Transcription factor
TF locus tag: cce_3731
Regulator family: LysR
Regulation mode: repressor
Biological process: Carbon dioxide fixation
Effector:
Regulog: CcmR - Cyanobacteria
Statistics of regulated genes:
- Genes 22
- Operons 8
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 72 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -299
Score: 4.9
Sequence: ATAGATAAATACCTAT
Locus tag: cce_0305
Name: cmpA
Funciton: Bicarbontate ABC transporter, substrate-binding protein
Locus tag: cce_0304
Name: cmpB
Funciton: Bicarbontate ABC transporter, permease protein
Locus tag: cce_0303
Name: cmpC
Funciton: Bicarbontate ABC transporter, ATP-binding protein 1
Locus tag: cce_0302
Name: cmpD
Funciton: Bicarbontate ABC transporter, ATP-binding protein 2
cmpA
Bicarbontate ABC transporter, substrate-binding protein
cmpB
Bicarbontate ABC transporter, permease protein
cmpC
Bicarbontate ABC transporter, ATP-binding protein 1
cmpD
Bicarbontate ABC transporter, ATP-binding protein 2

Position: -52
Score: 4.5
Sequence: ATAGATTTTTGTCTTA
Locus tag: cce_2937
Name: sbtB
Funciton: Predicted membrane protein
sbtB
Predicted membrane protein

Position: -74
Score: 5
Sequence: ATAGACTTTTGACTAA
Locus tag: cce_3974
Name: glpX
Funciton: Fructose-1,6-bisphosphatase II
glpX
Fructose-1,6-bisphosphatase II

Position: -232
Score: 4.5
Sequence: ATAGTAATTAGCCTAT
Position: -200
Score: 5
Sequence: ATAGAATCTAGTCTAT
Locus tag: cce_1689
Name: bicA
Funciton: Bicarbonate transporter
Locus tag: cce_1688
Name: nhaS
Funciton: Predicted sodium/hydrogen exchanger
Locus tag: cce_1687
Name: cce_1687
Funciton: Predicted membrane protein (COG3431)
Locus tag: cce_1686
Name: mnhC
Funciton: Na/H antiporter, subunit C
Locus tag: cce_1685
Name: mnhD
Funciton: Na/H antiporter, subunit D
Locus tag: cce_1684
Name: mnhE
Funciton: Predicted Na/H antiporter, subunit E
Locus tag: cce_1683
Name: mnhF
Funciton: Na/H antiporter, subunit F
Locus tag: cce_1682
Name: mnhG
Funciton: Na/H antiporter, subunit G
Locus tag: cce_1681
Name: slr2011
Funciton: Predicted subunit of the Na/H antiporter
Locus tag: cce_1680
Name: mnhB
Funciton: Na/H antiporter, subunit B
bicA
Bicarbonate transporter
nhaS
Predicted sodium/hydrogen exchanger
cce_1687
Predicted membrane protein (COG3431)
mnhC
Na/H antiporter, subunit C
mnhD
Na/H antiporter, subunit D
mnhE
Predicted Na/H antiporter, subunit E
mnhF
Na/H antiporter, subunit F
mnhG
Na/H antiporter, subunit G
slr2011
Predicted subunit of the Na/H antiporter
mnhB
Na/H antiporter, subunit B

Position: -181
Score: 4
Sequence: ATAGATCGATATATAT
Locus tag: cce_2939
Name: sbtA
Funciton: High-affinity, low-flux sodium dependent bicarbonate transporter
sbtA
High-affinity, low-flux sodium dependent bicarbonate transporter

Position: -180
Score: 5.1
Sequence: ATTGATTTTAGGCTAT
Locus tag: cce_2494
Name: mnhD
Funciton: Na/H antiporter, subunit D
mnhD
Na/H antiporter, subunit D

Position: -133
Score: 4.3
Sequence: ATAGATTTATTTCAAC
Position: -101
Score: 4.8
Sequence: ATGGAAATAAGTCTAT
Locus tag: cce_3731
Name: ccmR
Funciton: Carbon assimilation transcriptional regulator, LysR family
ccmR
Carbon assimilation transcriptional regulator, LysR family

Position: -74
Score: 5.5
Sequence: ATAGACTTAATTCTAT
Locus tag: cce_0603
Name: ndhF3
Funciton: NADH dehydrogenase subunit F
Locus tag: cce_0604
Name: ndhD3
Funciton: NADH dehydrogenase subunit D
Locus tag: cce_0605
Name: cupA
Funciton: CO2 uptake protein
ndhF3
NADH dehydrogenase subunit F
ndhD3
NADH dehydrogenase subunit D
cupA
CO2 uptake protein
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