Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NarP in Serratia proteamaculans 568

Properties
Regulator type: Transcription factor
TF locus tag: Spro_3490
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrate; Nitrite
Regulog: NarP - Enterobacteriales
Statistics of regulated genes:
- Genes 46
- Operons 12
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 125 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -240
Score: 4.6
Sequence: TACCTCTAACGAAGTA
Locus tag: Spro_2898
Name: narK
Funciton: Nitrate/nitrite antiporter
narK
Nitrate/nitrite antiporter

Position: -243
Score: 4.8
Sequence: TCCCCCTAAAGGGGTA
Locus tag: Spro_3489
Name: narQ
Funciton: Nitrate/nitrite sensor kinase NarQ (EC 2.7.3.-)
Locus tag: Spro_3490
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
narQ
Nitrate/nitrite sensor kinase NarQ (EC 2.7.3.-)
narP
Nitrate/nitrite response regulator protein NarP, LuxR family

Position: -138
Score: 4.7
Sequence: TACTTCGTTAGAGGTA
Locus tag: Spro_2899
Name: narX
Funciton: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
Locus tag: Spro_2900
Name: narL
Funciton: Nitrate/nitrite response regulator protein NarL, LuxR family
narX
Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
narL
Nitrate/nitrite response regulator protein NarL, LuxR family

Position: -198
Score: 4.2
Sequence: TACCTCGTAAATGGTA
Locus tag: Spro_4012
Name: pdhR
Funciton: Pyruvate utilization transcriptional regulator PdhR, GntR family
Locus tag: Spro_4011
Name: aceE
Funciton: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Locus tag: Spro_4010
Name: aceF
Funciton: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
Locus tag: Spro_4009
Name: lpd
Funciton: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)
pdhR
Pyruvate utilization transcriptional regulator PdhR, GntR family
aceE
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
aceF
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
lpd
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)

Position: -33
Score: 4.6
Sequence: TACCTCCTCAGGGGTA
Locus tag: Spro_0001
Name: atpI
Funciton: ATP synthase maturation
Locus tag: Spro_0002
Name: atpB
Funciton: ATP synthase, F0 complex, A chain (EC 3.6.3.14)
Locus tag: Spro_0003
Name: atpE
Funciton: ATP synthase, F0 complex, C chain (EC 3.6.3.14)
Locus tag: Spro_0004
Name: atpF
Funciton: ATP synthase, F0 complex, B chain (EC 3.6.3.14)
Locus tag: Spro_0005
Name: atpH
Funciton: ATP synthase, F1 complex, delta chain (EC 3.6.3.14)
Locus tag: Spro_0006
Name: atpA
Funciton: ATP synthase, F1 complex, alpha chain (EC 3.6.3.14)
Locus tag: Spro_0007
Name: atpG
Funciton: ATP synthase, F1 complex, gamma chain (EC 3.6.3.14)
Locus tag: Spro_0008
Name: atpD
Funciton: ATP synthase, F1 complex, beta chain (EC 3.6.3.14)
Locus tag: Spro_0009
Name: atpC
Funciton: ATP synthase, F1 complex, epsilon chain (EC 3.6.3.14)
atpI
ATP synthase maturation
atpB
ATP synthase, F0 complex, A chain (EC 3.6.3.14)
atpE
ATP synthase, F0 complex, C chain (EC 3.6.3.14)
atpF
ATP synthase, F0 complex, B chain (EC 3.6.3.14)
atpH
ATP synthase, F1 complex, delta chain (EC 3.6.3.14)
atpA
ATP synthase, F1 complex, alpha chain (EC 3.6.3.14)
atpG
ATP synthase, F1 complex, gamma chain (EC 3.6.3.14)
atpD
ATP synthase, F1 complex, beta chain (EC 3.6.3.14)
atpC
ATP synthase, F1 complex, epsilon chain (EC 3.6.3.14)

Position: -252
Score: 4
Sequence: TACCCAAGAGTAGTTA
Locus tag: Spro_2704
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
adhE
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)

Position: -193
Score: 3.8
Sequence: TGATACTTTAGGGGTA
Locus tag: Spro_2883
Name: narG
Funciton: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
Locus tag: Spro_2882
Name: narH
Funciton: Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
Locus tag: Spro_2881
Name: narJ
Funciton: Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
Locus tag: Spro_2880
Name: narI
Funciton: Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)
narG
Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
narH
Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
narJ
Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
narI
Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)

Position: -28
Score: 4.5
Sequence: TACCCGTAAGTAGGTA
Locus tag: Spro_2674
Name: ompW
Funciton: Outer membrane protein W precursor
ompW
Outer membrane protein W precursor

Position: -143
Score: 4.3
Sequence: TACCCACTTCTGAGTA
Locus tag: Spro_1687
Name: dmsA
Funciton: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Locus tag: Spro_1688
Name: dmsB
Funciton: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
Locus tag: Spro_1689
Name: dmsC
Funciton: Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-)
Locus tag: Spro_1690
Name: dmsD
Funciton: Dimethyl sulfoxide reductase chaperone protein dmsD
dmsA
Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
dmsB
Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
dmsC
Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-)
dmsD
Dimethyl sulfoxide reductase chaperone protein dmsD

Position: -197
Score: 4.5
Sequence: TACTCCCGAATGGGTA
Position: -101
Score: 4.5
Sequence: TACCACATTAGAGGTA
Locus tag: Spro_4595
Name: nirB
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: Spro_4596
Name: nirD
Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: Spro_4597
Name: nirC
Funciton: Nitrite transporter, FNT family
Locus tag: Spro_4598
Name: cysG
Funciton: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
nirB
Nitrite reductase large subunit (EC 1.7.1.4)
nirD
Nitrite reductase small subunit (EC 1.7.1.4)
nirC
Nitrite transporter, FNT family
cysG
Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)

Position: -49
Score: 4.9
Sequence: TACCCCTATTGGAGTA
Locus tag: Spro_3391
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: Spro_3390
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: Spro_3389
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: Spro_3388
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: Spro_3387
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: Spro_3386
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: Spro_3385
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: Spro_3384
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
Locus tag: Spro_3383
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
ccmC
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
ccmD
Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
ccmE
Cytochrome c-type biogenesis protein CcmE, heme chaperone
ccmF
Cytochrome c heme lyase, subunit CcmF
ccmG
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
ccmH
Cytochrome c heme lyase, subunit CcmH
ccmH
Cytochrome c heme lyase, subunit CcmH

Position: -322
Score: 4.7
Sequence: TACCCCTTTAGGGGGA
Locus tag: Spro_3488
Name: napF
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Locus tag: Spro_3487
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Spro_3486
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Spro_3485
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: Spro_3484
Name: napC
Funciton: Cytochrome c-type protein NapC
napF
Periplasmic nitrate reductase, ferredoxin-type protein NapF
napD
Periplasmic nitrate reductase component NapD
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
napB
Nitrate reductase cytochrome c550-type subunit
napC
Cytochrome c-type protein NapC
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD