Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NarP in Salmonella typhimurium LT2

Properties
Regulator type: Transcription factor
TF locus tag: STM2246
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrate; Nitrite
Regulog: NarP - Enterobacteriales
Statistics of regulated genes:
- Genes 87
- Operons 23
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 125 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -365
Score: 4
Sequence: TAACTCATGATGGGTA
Locus tag: STM0075
Name: fixA
Funciton: Flavoprotein involved in anaerobic carnitine metabolism
Locus tag: STM0076
Name: fixB
Funciton: Flavoprotein involved in anaerobic carnitine metabolism
Locus tag: STM0077
Name: fixC
Funciton: Flavoprotein involved in anaerobic carnitine metabolism (EC 1.5.5.-)
Locus tag: STM0078
Name: fixX
Funciton: Predicted ferredoxin involved in anaerobic carnitine metabolism
fixA
Flavoprotein involved in anaerobic carnitine metabolism
fixB
Flavoprotein involved in anaerobic carnitine metabolism
fixC
Flavoprotein involved in anaerobic carnitine metabolism (EC 1.5.5.-)
fixX
Predicted ferredoxin involved in anaerobic carnitine metabolism

Position: -159
Score: 4.3
Sequence: TCCTCCCAAAGGAGTA
Locus tag: STM1764
Name: narG
Funciton: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
Locus tag: STM1763
Name: narH
Funciton: Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
Locus tag: STM1762
Name: narJ
Funciton: Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
Locus tag: STM1761
Name: narI
Funciton: Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)
narG
Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
narH
Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
narJ
Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
narI
Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)

Position: -78
Score: 3.9
Sequence: CACCCCGAAAGAGTTA
Locus tag: STM4399
Name: dnrN
Funciton: Nitric oxide-dependent regulator DnrN
dnrN
Nitric oxide-dependent regulator DnrN

Position: -22
Score: 4.2
Sequence: TACTTTTCAAGGAGTA
Locus tag: STM2473
Name: talA
Funciton: Transaldolase (EC 2.2.1.2)
Locus tag: STM2474
Name: tktB
Funciton: Transketolase (EC 2.2.1.1)
talA
Transaldolase (EC 2.2.1.2)
tktB
Transketolase (EC 2.2.1.1)

Position: -188
Score: 4.1
Sequence: TACCTCCCTGGAGTTA
Locus tag: STM1570
Name: fdnG
Funciton: Formate dehydrogenase N, alpha subunit (EC 1.2.1.2)
Locus tag: STM1569
Name: fdnH
Funciton: Formate dehydrogenase N, beta subunit (EC 1.2.1.2)
Locus tag: STM1568
Name: fdnI
Funciton: Formate dehydrogenase N, gamma subunit (EC 1.2.1.2)
fdnG
Formate dehydrogenase N, alpha subunit (EC 1.2.1.2)
fdnH
Formate dehydrogenase N, beta subunit (EC 1.2.1.2)
fdnI
Formate dehydrogenase N, gamma subunit (EC 1.2.1.2)

Position: -55
Score: 4.7
Sequence: TACTTCATTGTGGGTA
Locus tag: STM1732
Name: ompW
Funciton: Outer membrane protein W precursor
ompW
Outer membrane protein W precursor

Position: -216
Score: 4.6
Sequence: TACTCAGAAGTGAGTA
Locus tag: STM1749
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
adhE
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)

Position: -91
Score: 4.2
Sequence: TAATCGTTAATGGGTA
Locus tag: STM0781
Name: modA
Funciton: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: STM0782
Name: modB
Funciton: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
Locus tag: STM0783
Name: modC
Funciton: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
modA
Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
modB
Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
modC
Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)

Position: -230
Score: 4.3
Sequence: TTACCCTTAATGAGTA
Position: -120
Score: 4.5
Sequence: TAACTCGTTATAGGTA
Locus tag: STM1766
Name: narX
Funciton: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
Locus tag: STM1767
Name: narL
Funciton: Nitrate/nitrite response regulator protein NarL, LuxR family
narX
Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
narL
Nitrate/nitrite response regulator protein NarL, LuxR family

Position: -236
Score: 4.2
Sequence: TACCTATAACGAGTTA
Position: -126
Score: 4
Sequence: TACTCATTAAGGGTAA
Locus tag: STM1765
Name: narK
Funciton: Nitrate/nitrite antiporter
narK
Nitrate/nitrite antiporter

Position: -30
Score: 4.5
Sequence: TACCTCGAAGTGAGCA
Locus tag: STM3872
Name: atpI
Funciton: ATP synthase maturation
Locus tag: STM3871
Name: atpB
Funciton: ATP synthase, F0 complex, A chain (EC 3.6.3.14)
Locus tag: STM3870
Name: atpE
Funciton: ATP synthase, F0 complex, C chain (EC 3.6.3.14)
Locus tag: STM3869
Name: atpF
Funciton: ATP synthase, F0 complex, B chain (EC 3.6.3.14)
Locus tag: STM3868
Name: atpH
Funciton: ATP synthase, F1 complex, delta chain (EC 3.6.3.14)
Locus tag: STM3867
Name: atpA
Funciton: ATP synthase, F1 complex, alpha chain (EC 3.6.3.14)
Locus tag: STM3866
Name: atpG
Funciton: ATP synthase, F1 complex, gamma chain (EC 3.6.3.14)
Locus tag: STM3865
Name: atpD
Funciton: ATP synthase, F1 complex, beta chain (EC 3.6.3.14)
Locus tag: STM3864
Name: atpC
Funciton: ATP synthase, F1 complex, epsilon chain (EC 3.6.3.14)
atpI
ATP synthase maturation
atpB
ATP synthase, F0 complex, A chain (EC 3.6.3.14)
atpE
ATP synthase, F0 complex, C chain (EC 3.6.3.14)
atpF
ATP synthase, F0 complex, B chain (EC 3.6.3.14)
atpH
ATP synthase, F1 complex, delta chain (EC 3.6.3.14)
atpA
ATP synthase, F1 complex, alpha chain (EC 3.6.3.14)
atpG
ATP synthase, F1 complex, gamma chain (EC 3.6.3.14)
atpD
ATP synthase, F1 complex, beta chain (EC 3.6.3.14)
atpC
ATP synthase, F1 complex, epsilon chain (EC 3.6.3.14)

Position: -143
Score: 4.8
Sequence: TACCTCTTTGGCGGTA
Locus tag: STM0937
Name: hcp
Funciton: Hydroxylamine reductase (EC 1.7.-.-)
Locus tag: STM0936
Name: hcr
Funciton: NADH oxidoreductase hcr (EC 1.-.-.-)
hcp
Hydroxylamine reductase (EC 1.7.-.-)
hcr
NADH oxidoreductase hcr (EC 1.-.-.-)

Position: -104
Score: 4.3
Sequence: TACCTGATAGTGGGTA
Locus tag: STM2336
Name: yfbV
Funciton: Predicted membrane protein
Locus tag: STM2335
Name: yfbU
Funciton: Conserved hypothetical protein
Locus tag: STM2334
Name: yfbT
Funciton: Predicted phosphatase
Locus tag: STM2333
Name: yfbS
Funciton: Predicted transport protein
yfbV
Predicted membrane protein
yfbU
Conserved hypothetical protein
yfbT
Predicted phosphatase
yfbS
Predicted transport protein

Position: -131
Score: 4.1
Sequence: TACCCATCATGAGTTA
Locus tag: STM0074
Name: caiT
Funciton: L-carnitine/gamma-butyrobetaine antiporter
Locus tag: STM0073
Name: caiA
Funciton: Crotonobetainyl-CoA dehydrogenase (EC 1.3.99.-)
Locus tag: STM0072
Name: caiB
Funciton: Crotonobetainyl-CoA:carnitine CoA-transferase (EC 2.8.3.-)
Locus tag: STM0071
Name: caiC
Funciton: Crotonobetaine carnitine-CoA ligase (EC 6.3.2.-)
Locus tag: STM0070
Name: caiD
Funciton: Carnitine racemase (EC 5.-.-.-) / Carnitinyl-CoA dehydratase (EC 4.2.1.-)
Locus tag: STM0069
Name: caiE
Funciton: Carnitine operon protein CaiE
caiT
L-carnitine/gamma-butyrobetaine antiporter
caiA
Crotonobetainyl-CoA dehydrogenase (EC 1.3.99.-)
caiB
Crotonobetainyl-CoA:carnitine CoA-transferase (EC 2.8.3.-)
caiC
Crotonobetaine carnitine-CoA ligase (EC 6.3.2.-)
caiD
Carnitine racemase (EC 5.-.-.-) / Carnitinyl-CoA dehydratase (EC 4.2.1.-)
caiE
Carnitine operon protein CaiE

Position: -48
Score: 4.3
Sequence: TTCCCATAATTGGGTA
Locus tag: STM3328
Name: arcB
Funciton: Aerobic respiration control sensor protein arcB (EC 2.7.3.-)
arcB
Aerobic respiration control sensor protein arcB (EC 2.7.3.-)

Position: -177
Score: 4.5
Sequence: TAACTCTAAAGTGGTA
Locus tag: STM4277
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552)
Locus tag: STM4278.S
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: STM4279
Name: nrfC
Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: STM4280
Name: nrfD
Funciton: Nitrite reductase, NrfD component
Locus tag: STM4281
Name: nrfE
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
Locus tag: STM4282
Name: nrfG
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfG
nrfA
Nitrite reductase, cytochrome c(552)
nrfB
Cytochrome c-type protein NrfB precursor
nrfC
Nitrite reductase, Fe-S center subunit
nrfD
Nitrite reductase, NrfD component
nrfE
Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
nrfG
Nitrite reductase, cytochrome c-type heme lyase subunit nrfG

Position: -204
Score: 4.3
Sequence: TACCTCCTGGTGGGTA
Locus tag: STM0151
Name: pdhR
Funciton: Pyruvate utilization transcriptional regulator PdhR, GntR family
Locus tag: STM0152
Name: aceE
Funciton: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Locus tag: STM0153
Name: aceF
Funciton: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
Locus tag: STM0154
Name: lpd
Funciton: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)
pdhR
Pyruvate utilization transcriptional regulator PdhR, GntR family
aceE
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
aceF
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
lpd
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)

Position: -161
Score: 4.6
Sequence: TACCCTATTAGGGGTA
Locus tag: STM0964
Name: dmsA
Funciton: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Locus tag: STM0965
Name: dmsB
Funciton: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
Locus tag: STM0966
Name: dmsC
Funciton: Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-)
dmsA
Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
dmsB
Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
dmsC
Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-)

Position: -95
Score: 5
Sequence: TACTCCCAAAGGGGTA
Locus tag: STM1499
Name: ynfE
Funciton: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Locus tag: STM1498
Name: ynfF
Funciton: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Locus tag: STM1497
Name: ynfG
Funciton: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
Locus tag: STM1496
Name: ynfH
Funciton: Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-)
Locus tag: STM1495
Name: dmsD
Funciton: Dimethyl sulfoxide reductase chaperone protein dmsD
ynfE
Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
ynfF
Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
ynfG
Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
ynfH
Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-)
dmsD
Dimethyl sulfoxide reductase chaperone protein dmsD

Position: -101
Score: 5
Sequence: TACCCATTAAGAGGTA
Locus tag: STM3474
Name: nirB
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: STM3475
Name: nirD
Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: STM3476
Name: nirC
Funciton: Nitrite transporter, FNT family
Locus tag: STM3477
Name: cysG
Funciton: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
nirB
Nitrite reductase large subunit (EC 1.7.1.4)
nirD
Nitrite reductase small subunit (EC 1.7.1.4)
nirC
Nitrite transporter, FNT family
cysG
Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)

Position: -99
Score: 3.7
Sequence: TAACCAATAAATGGTA
Locus tag: STM1271
Name: yeaR
Funciton: Conserved hypothetical protein
Locus tag: STM1272
Name: yoaG
Funciton: Conserved hypothetical protein
yeaR
Conserved hypothetical protein
yoaG
Conserved hypothetical protein

Position: -132
Score: 4.8
Sequence: TACCTCTATCGGGGTA
Locus tag: STM2261
Name: napF
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Locus tag: STM2260
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: STM2259
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: STM2258
Name: napG
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: STM2257
Name: napH
Funciton: Periplasmic nitrate reductase, polyferredoxin NapH
Locus tag: STM2256
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: STM2255
Name: napC
Funciton: Cytochrome c-type protein NapC
Locus tag: STM2254
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: STM2253
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: STM2252
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: STM2251
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: STM2250
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: STM2249
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: STM2248
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: STM2247
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
napF
Periplasmic nitrate reductase, ferredoxin-type protein NapF
napD
Periplasmic nitrate reductase component NapD
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
napG
Periplasmic nitrate reductase, ferredoxin-type protein NapG
napH
Periplasmic nitrate reductase, polyferredoxin NapH
napB
Nitrate reductase cytochrome c550-type subunit
napC
Cytochrome c-type protein NapC
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
ccmC
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
ccmD
Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
ccmE
Cytochrome c-type biogenesis protein CcmE, heme chaperone
ccmF
Cytochrome c heme lyase, subunit CcmF
ccmG
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
ccmH
Cytochrome c heme lyase, subunit CcmH

Position: -100
Score: 4.7
Sequence: TACCCATAAAGGAGCA
Locus tag: STM4343
Name: frdA
Funciton: Fumarate reductase subunit A (EC 1.3.5.4)
Locus tag: STM4342
Name: frdB
Funciton: Fumarate reductase subunit B (EC 1.3.5.4)
Locus tag: STM4341
Name: frdC
Funciton: Fumarate reductase subunit C (EC 1.3.5.4)
Locus tag: STM4340
Name: frdD
Funciton: Fumarate reductase subunit D (EC 1.3.5.4)
frdA
Fumarate reductase subunit A (EC 1.3.5.4)
frdB
Fumarate reductase subunit B (EC 1.3.5.4)
frdC
Fumarate reductase subunit C (EC 1.3.5.4)
frdD
Fumarate reductase subunit D (EC 1.3.5.4)
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