Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NarP in Erwinia carotovora subsp. atroseptica SCRI1043

Properties
Regulator type: Transcription factor
TF locus tag: ECA1901
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrate; Nitrite
Regulog: NarP - Enterobacteriales
Statistics of regulated genes:
- Genes 45
- Operons 13
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 125 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -257
Score: 4.3
Sequence: TCACCCTTTAGAGGTA
Locus tag: ECA1900
Name: narQ
Funciton: Nitrate/nitrite sensor kinase NarQ (EC 2.7.3.-)
Locus tag: ECA1901
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
narQ
Nitrate/nitrite sensor kinase NarQ (EC 2.7.3.-)
narP
Nitrate/nitrite response regulator protein NarP, LuxR family

Position: -86
Score: 4.6
Sequence: TAACCCTTTAGGGTTA
Locus tag: ECA1882
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: ECA1883
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: ECA1884
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: ECA1885
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: ECA1886
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: ECA1887
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: ECA1888
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: ECA1889
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
Locus tag: ECA1890
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
ccmC
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
ccmD
Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
ccmE
Cytochrome c-type biogenesis protein CcmE, heme chaperone
ccmF
Cytochrome c heme lyase, subunit CcmF
ccmG
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
ccmH
Cytochrome c heme lyase, subunit CcmH
ccmH
Cytochrome c heme lyase, subunit CcmH

Position: -111
Score: 4.4
Sequence: TACCTCTAAAGGGTGA
Locus tag: ECA1898
Name: napF
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Locus tag: ECA1897
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: ECA1896
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: ECA1895
Name: napG
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: ECA1894
Name: napH
Funciton: Periplasmic nitrate reductase, polyferredoxin NapH
Locus tag: ECA1893
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: ECA1892
Name: napC
Funciton: Cytochrome c-type protein NapC
napF
Periplasmic nitrate reductase, ferredoxin-type protein NapF
napD
Periplasmic nitrate reductase component NapD
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
napG
Periplasmic nitrate reductase, ferredoxin-type protein NapG
napH
Periplasmic nitrate reductase, polyferredoxin NapH
napB
Nitrate reductase cytochrome c550-type subunit
napC
Cytochrome c-type protein NapC

Position: -217
Score: 4.2
Sequence: CACTCCTTAATGAGTA
Position: -106
Score: 4.7
Sequence: TACTCACTAGTGGGTA
Locus tag: ECA2029
Name: narX
Funciton: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
Locus tag: ECA2028
Name: narL
Funciton: Nitrate/nitrite response regulator protein NarL, LuxR family
narX
Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
narL
Nitrate/nitrite response regulator protein NarL, LuxR family

Position: -289
Score: 4
Sequence: CACCCACAAATAGGTA
Locus tag: ECA2326
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
adhE
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)

Position: -56
Score: 4.9
Sequence: TACCTACTTAGGGGTA
Locus tag: ECA2303
Name: ompW
Funciton: Outer membrane protein W precursor
ompW
Outer membrane protein W precursor

Position: -122
Score: 4.3
Sequence: TACCCCTTTGTAGGTG
Locus tag: ECA1408
Name: fdnG
Funciton: Formate dehydrogenase N, alpha subunit (EC 1.2.1.2)
Locus tag: ECA1407
Name: fdnH
Funciton: Formate dehydrogenase N, beta subunit (EC 1.2.1.2)
Locus tag: ECA1406
Name: fdnI
Funciton: Formate dehydrogenase N, gamma subunit (EC 1.2.1.2)
fdnG
Formate dehydrogenase N, alpha subunit (EC 1.2.1.2)
fdnH
Formate dehydrogenase N, beta subunit (EC 1.2.1.2)
fdnI
Formate dehydrogenase N, gamma subunit (EC 1.2.1.2)

Position: -81
Score: 4.8
Sequence: TACCTCGTAAGCGGTA
Locus tag: ECA3606
Name: dnrN
Funciton: Nitric oxide-dependent regulator DnrN
dnrN
Nitric oxide-dependent regulator DnrN

Position: -33
Score: 4.3
Sequence: TACCTCTGAAAAGGTA
Locus tag: ECA4519
Name: atpI
Funciton: ATP synthase maturation
Locus tag: ECA4518
Name: atpB
Funciton: ATP synthase, F0 complex, A chain (EC 3.6.3.14)
Locus tag: ECA4517
Name: atpE
Funciton: ATP synthase, F0 complex, C chain (EC 3.6.3.14)
Locus tag: ECA4516
Name: atpF
Funciton: ATP synthase, F0 complex, B chain (EC 3.6.3.14)
Locus tag: ECA4515
Name: atpH
Funciton: ATP synthase, F1 complex, delta chain (EC 3.6.3.14)
Locus tag: ECA4514
Name: atpA
Funciton: ATP synthase, F1 complex, alpha chain (EC 3.6.3.14)
Locus tag: ECA4513
Name: atpG
Funciton: ATP synthase, F1 complex, gamma chain (EC 3.6.3.14)
Locus tag: ECA4512
Name: atpD
Funciton: ATP synthase, F1 complex, beta chain (EC 3.6.3.14)
Locus tag: ECA4511
Name: atpC
Funciton: ATP synthase, F1 complex, epsilon chain (EC 3.6.3.14)
atpI
ATP synthase maturation
atpB
ATP synthase, F0 complex, A chain (EC 3.6.3.14)
atpE
ATP synthase, F0 complex, C chain (EC 3.6.3.14)
atpF
ATP synthase, F0 complex, B chain (EC 3.6.3.14)
atpH
ATP synthase, F1 complex, delta chain (EC 3.6.3.14)
atpA
ATP synthase, F1 complex, alpha chain (EC 3.6.3.14)
atpG
ATP synthase, F1 complex, gamma chain (EC 3.6.3.14)
atpD
ATP synthase, F1 complex, beta chain (EC 3.6.3.14)
atpC
ATP synthase, F1 complex, epsilon chain (EC 3.6.3.14)

Position: -194
Score: 4.3
Sequence: TAATTCTTTAGTGGTA
Locus tag: ECA2031
Name: narG
Funciton: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
Locus tag: ECA2032
Name: narH
Funciton: Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
Locus tag: ECA2033
Name: narJ
Funciton: Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
Locus tag: ECA2034
Name: narI
Funciton: Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)
narG
Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
narH
Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
narJ
Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
narI
Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)

Position: -246
Score: 4.8
Sequence: TACCCACTAGTGAGTA
Position: -135
Score: 4.3
Sequence: TACTCATTAAGGAGTG
Locus tag: ECA2030
Name: narK
Funciton: Nitrate/nitrite antiporter
narK
Nitrate/nitrite antiporter

Position: -100
Score: 4.8
Sequence: TACCCACAAAGAAGTA
Locus tag: ECA4079
Name: nirB
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: ECA4080
Name: nirD
Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: ECA4081
Name: cysG
Funciton: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
nirB
Nitrite reductase large subunit (EC 1.7.1.4)
nirD
Nitrite reductase small subunit (EC 1.7.1.4)
cysG
Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)

Position: -170
Score: 4.2
Sequence: TAACCACAATTGAGTA
Locus tag: ECA1474
Name: yeaR
Funciton: Conserved hypothetical protein
Locus tag: ECA1472
Name: yoaG
Funciton: Conserved hypothetical protein
yeaR
Conserved hypothetical protein
yoaG
Conserved hypothetical protein
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