Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of TnrA in Geobacillus kaustophilus HTA426

Properties
Regulator type: Transcription factor
TF locus tag: GK1860
Regulator family: MerR
Regulation mode: repressor (activator)
Biological process: Nitrogen assimilation
Effector: NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase
Regulog: TnrA - Bacillales
Statistics of regulated genes:
- Genes 32
- Operons 10
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 304 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -177
Score: 4.9
Sequence: TGTAAGAAATTATGACG
Locus tag: GK2046
Name: ilvD
Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9)
ilvD
Dihydroxy-acid dehydratase (EC 4.2.1.9)

Position: -286
Score: 4.6
Sequence: TGTGATAAAAAGTTACA
Position: -202
Score: 5.2
Sequence: TGTTATATAAACTGACA
Locus tag: GK1868
Name: nasD
Funciton: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Locus tag: GK1867
Name: nasE
Funciton: Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
Locus tag: GK1866
Name: nasC
Funciton: Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
nasD
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
nasE
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
nasC
Assimilatory nitrate reductase large subunit (EC:1.7.99.4)

Position: -124
Score: 4.4
Sequence: TGTTAAGAAATTTAACA
Position: -48
Score: 5.4
Sequence: TGTTATATATTATGACA
Locus tag: GK1452
Name: nrgA
Funciton: Ammonium transporter
Locus tag: GK1453
Name: null
Funciton: Predicted nucleotidyltransferase DUF294 family
Locus tag: GK1454
Name: dpo3
Funciton: DNA polymerase III, epsilon subunit
nrgA
Ammonium transporter
Predicted nucleotidyltransferase DUF294 family
dpo3
DNA polymerase III, epsilon subunit

Position: -423
Score: 4.4
Sequence: TGTCAAAATTATTAACA
Position: -173
Score: 4.2
Sequence: TTTCAAATATACTAACA
Locus tag: GK0811
Name: dppE
Funciton: Oligopeptide ABC transporter (oligopeptide-binding protein)
Locus tag: GK0812
Name: oppB
Funciton: Oligopeptide ABC transporter (permease)
Locus tag: GK0813
Name: oppC
Funciton: Oligopeptide ABC transporter (permease)
Locus tag: GK0814
Name: oppD
Funciton: Oligopeptide ABC transporter (ATP-binding protein)
Locus tag: GK0815
Name: oppF
Funciton: Oligopeptide ABC transporter (ATP-binding protein)
dppE
Oligopeptide ABC transporter (oligopeptide-binding protein)
oppB
Oligopeptide ABC transporter (permease)
oppC
Oligopeptide ABC transporter (permease)
oppD
Oligopeptide ABC transporter (ATP-binding protein)
oppF
Oligopeptide ABC transporter (ATP-binding protein)

Position: -100
Score: 4.2
Sequence: GGTTAGAAAATTTTACG
Locus tag: GK2487
Name: yqzL
Funciton: Hypothetical protein
Locus tag: GK2486
Name: recO
Funciton: DNA recombination and repair protein RecO
yqzL
Hypothetical protein
recO
DNA recombination and repair protein RecO

Position: -86
Score: 3.9
Sequence: TGTTAATTTTATTTACA
Position: -33
Score: 4.6
Sequence: CGTTAGAAAATATAACG
Locus tag: GK1860
Name: tnrA
Funciton: Transcriptional regulator of nitrogen assimilation, MerR family
tnrA
Transcriptional regulator of nitrogen assimilation, MerR family

Position: -224
Score: 4.3
Sequence: TGATAATAAATATAACA
Position: -201
Score: 5.2
Sequence: TGTAATAAAATGTGACA
Locus tag: GK1937
Name: urtA
Funciton: Urea ABC transporter, urea binding protein
Locus tag: GK1936
Name: urtB
Funciton: Urea ABC transporter, permease protein UrtB
Locus tag: GK1935
Name: urtC
Funciton: Urea ABC transporter, permease protein UrtC
Locus tag: GK1934
Name: utrD
Funciton: Urea ABC transporter, ATPase protein UrtD
Locus tag: GK1933
Name: urtE
Funciton: Urea ABC transporter, ATPase protein UrtE
Locus tag: GK1932
Name: ureA
Funciton: Urease gamma subunit (EC 3.5.1.5)
Locus tag: GK1931
Name: ureB
Funciton: Urease beta subunit (EC 3.5.1.5)
Locus tag: GK1930
Name: ureC
Funciton: Urease alpha subunit (EC 3.5.1.5)
Locus tag: GK1929
Name: ureE
Funciton: Urease accessory protein UreE
Locus tag: GK1928
Name: ureF
Funciton: Urease accessory protein UreF
Locus tag: GK1927
Name: ureG
Funciton: Urease accessory protein UreG
Locus tag: GK1926
Name: ureD
Funciton: Urease accessory protein UreD
Locus tag: GK1925
Name: ureH
Funciton: Urease accessory protein ureH
urtA
Urea ABC transporter, urea binding protein
urtB
Urea ABC transporter, permease protein UrtB
urtC
Urea ABC transporter, permease protein UrtC
utrD
Urea ABC transporter, ATPase protein UrtD
urtE
Urea ABC transporter, ATPase protein UrtE
ureA
Urease gamma subunit (EC 3.5.1.5)
ureB
Urease beta subunit (EC 3.5.1.5)
ureC
Urease alpha subunit (EC 3.5.1.5)
ureE
Urease accessory protein UreE
ureF
Urease accessory protein UreF
ureG
Urease accessory protein UreG
ureD
Urease accessory protein UreD
ureH
Urease accessory protein ureH

Position: -176
Score: 4.6
Sequence: CGTTATATTTTCTAACG
Position: -123
Score: 3.9
Sequence: TGTAAATAAAATTAACA
Locus tag: GK1861
Name: null
Funciton: Hypothetical protein
Locus tag: GK1862
Name: ykzB
Funciton: Hypothetical protein
Hypothetical protein
ykzB
Hypothetical protein

Position: -44
Score: 3.5
Sequence: TGAATTATTATATTAAA
Locus tag: GK2020
Name: yclF
Funciton: Di-tripeptide-proton ABC symporter
yclF
Di-tripeptide-proton ABC symporter

Position: -16
Score: 4.9
Sequence: TGTGAGGTAATGTGACA
Locus tag: GK1637
Name: glnA2
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
glnA2
Glutamine synthetase type I (EC 6.3.1.2)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD