Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of TnrA in Bacillus pumilus SAFR-032

Properties
Regulator type: Transcription factor
TF locus tag: BPUM_1230
Regulator family: MerR
Regulation mode: repressor (activator)
Biological process: Nitrogen assimilation
Effector: NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase
Regulog: TnrA - Bacillales
Statistics of regulated genes:
- Genes 49
- Operons 23
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 304 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -34
Score: 4.7
Sequence: TGTTAAATAATTTCACA
Locus tag: BPUM_1042
Name: argC
Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Locus tag: BPUM_1043
Name: argJ
Funciton: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
Locus tag: BPUM_1044
Name: argB
Funciton: Acetylglutamate kinase (EC 2.7.2.8)
Locus tag: BPUM_1045
Name: argD
Funciton: Acetylornithine aminotransferase (EC 2.6.1.11)
Locus tag: BPUM_1046
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: BPUM_1047
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: BPUM_1048
Name: argF
Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3)
argC
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
argJ
Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
argB
Acetylglutamate kinase (EC 2.7.2.8)
argD
Acetylornithine aminotransferase (EC 2.6.1.11)
carA
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
carB
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
argF
Ornithine carbamoyltransferase (EC 2.1.3.3)

Position: -312
Score: 4.9
Sequence: TGTGAAAAAATATGACA
Locus tag: BPUM_2473
Name: ilvE
Funciton: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
ilvE
Branched-chain amino acid aminotransferase (EC 2.6.1.42)

Position: -93
Score: 3.8
Sequence: TGTTAAAAATGAATACA
Locus tag: BPUM_2382
Name: glnQ
Funciton: Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
Locus tag: BPUM_2383
Name: glnH
Funciton: Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)
Locus tag: BPUM_2384
Name: glnM
Funciton: Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
Locus tag: BPUM_2385
Name: glnP
Funciton: Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
glnQ
Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
glnH
Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)
glnM
Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
glnP
Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)

Position: -82
Score: 4.4
Sequence: TGTTAATATTCCTAACA
Position: -59
Score: 5.1
Sequence: TGACATATAATATAACA
Position: -54
Score: 4.2
Sequence: TATAATATAACATGACA
Locus tag: BPUM_1636
Name: glnR
Funciton: Transcriptional regulator of nitrogen excess response, MerR family
Locus tag: BPUM_1637
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
glnR
Transcriptional regulator of nitrogen excess response, MerR family
glnA
Glutamine synthetase type I (EC 6.3.1.2)

Position: -54
Score: 4.6
Sequence: TGTGAGATTTTATTACT
Locus tag: BPUM_1814
Name: gltA
Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: BPUM_1813
Name: gltB
Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
gltA
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
gltB
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)

Position: -116
Score: 4.6
Sequence: AGTAATAAAATCTCACA
Locus tag: BPUM_1815
Name: gltC
Funciton: Transcriptional regulator of glutamate biosynthesis (LysR family)
gltC
Transcriptional regulator of glutamate biosynthesis (LysR family)

Position: -162
Score: 5
Sequence: GGTCAGATTTTATGACA
Locus tag: BPUM_1922
Name: ilvD
Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9)
ilvD
Dihydroxy-acid dehydratase (EC 4.2.1.9)

Position: -106
Score: 4.9
Sequence: TGAAAGATTATGTTACA
Locus tag: BPUM_3259
Name: capB
Funciton: Poly-gamma-glutamate synthase subunit (EC 6.3.2.-)
Locus tag: BPUM_3258
Name: capC
Funciton: Poly-gamma-glutamate synthase subunit (EC 6.3.2.-)
Locus tag: BPUM_3257
Name: capA
Funciton: Poly-gamma-glutamate synthase subunit (EC 6.3.2.-)
Locus tag: BPUM_3256
Name: capE
Funciton: Poly-gamma-glutamate synthase subunit (EC 6.3.2.-)
Locus tag: BPUM_3255
Name: pgdS
Funciton: Gamma-DL-glutamyl hydrolase PgsS (EC 3.4.19.-)
capB
Poly-gamma-glutamate synthase subunit (EC 6.3.2.-)
capC
Poly-gamma-glutamate synthase subunit (EC 6.3.2.-)
capA
Poly-gamma-glutamate synthase subunit (EC 6.3.2.-)
capE
Poly-gamma-glutamate synthase subunit (EC 6.3.2.-)
pgdS
Gamma-DL-glutamyl hydrolase PgsS (EC 3.4.19.-)

Position: -142
Score: 4.4
Sequence: TGTCATGTTAGTTGACA
Locus tag: BPUM_2903
Name: pucR
Funciton: Transcriptional regulator of the purine degradation operon, PucR family
pucR
Transcriptional regulator of the purine degradation operon, PucR family

Position: -134
Score: 5.5
Sequence: TGTCATAAAATCTGACA
Locus tag: BPUM_2261
Name: yqzL
Funciton: Hypothetical protein
Locus tag: BPUM_2260
Name: recO
Funciton: DNA recombination and repair protein RecO
yqzL
Hypothetical protein
recO
DNA recombination and repair protein RecO

Position: -121
Score: 4
Sequence: TGTCAACTTTCCTTCCA
Position: -80
Score: 5.5
Sequence: TGTTATATTTTCTAACA
Locus tag: BPUM_1230
Name: tnrA
Funciton: Transcriptional regulator of nitrogen assimilation, MerR family
tnrA
Transcriptional regulator of nitrogen assimilation, MerR family

Position: -73
Score: 3.8
Sequence: TGAAAGAATTTATTTAA
Locus tag: BPUM_0344
Name: yclG
Funciton: Pectate lyase family protein
yclG
Pectate lyase family protein

Position: -113
Score: 5.5
Sequence: TGTTATATTTTCTAACA
Locus tag: BPUM_0379
Name: lamB
Funciton: Lactam utilization protein LamB
Locus tag: BPUM_0380
Name: ycsG
Funciton: Permease (transport protein)
Locus tag: BPUM_0381
Name: ycsI
Funciton: Hypothetical protein
Locus tag: BPUM_0382
Name: kipI
Funciton: Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)
Locus tag: BPUM_0383
Name: kipA
Funciton: Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)
Locus tag: BPUM_0384
Name: kipR
Funciton: Transcriptional regulator of initiation of developmental transcription at the onset of sporulation, IclR family
lamB
Lactam utilization protein LamB
ycsG
Permease (transport protein)
ycsI
Hypothetical protein
kipI
Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)
kipA
Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)
kipR
Transcriptional regulator of initiation of developmental transcription at the onset of sporulation, IclR family

Position: -70
Score: 4.5
Sequence: TGAGATAAAATCTGCCA
Locus tag: BPUM_0239
Name: ydaB
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
ydaB
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)

Position: -123
Score: 5.5
Sequence: TGTTAGAAAATATAACA
Position: -82
Score: 4
Sequence: TGGAAGGAAAGTTGACA
Locus tag: BPUM_1231
Name: ykzB
Funciton: Hypothetical protein
Locus tag: BPUM_1232
Name: ykoL
Funciton: Hypothetical protein
ykzB
Hypothetical protein
ykoL
Hypothetical protein

Position: -59
Score: 4.9
Sequence: TGTGATCTAATCTGACA
Position: 1
Score: 4
Sequence: TGCAAGGAAATTTGACA
Locus tag: BPUM_1877
Name: yhjC
Funciton: Hypothetical protein
Locus tag: BPUM_1878
Name: yodF
Funciton: Na+/solute symporter
yhjC
Hypothetical protein
yodF
Na+/solute symporter

Position: -64
Score: 4.3
Sequence: TGTTCGTTTATGTGACA
Locus tag: BPUM_3242
Name: ysnE
Funciton: GNAT family acetyltransferase
Locus tag: BPUM_3241
Name: null
Funciton: Sugar ABC superfamily ATP binding cassette transporter, binding protein
ysnE
GNAT family acetyltransferase
Sugar ABC superfamily ATP binding cassette transporter, binding protein

Position: 20
Score: 4.5
Sequence: TGACAGATTTTCTTACT
Locus tag: BPUM_2871
Name: yuiA
Funciton: Uncharacterized conserved protein contain two CXXC motifs
Locus tag: BPUM_2870
Name: yuiB
Funciton: Hypothetical protein
Locus tag: BPUM_2869
Name: yuiC
Funciton: Hypothetical protein
yuiA
Uncharacterized conserved protein contain two CXXC motifs
yuiB
Hypothetical protein
yuiC
Hypothetical protein

Position: -221
Score: 3.4
Sequence: TGTGAAAACAAATAAAA
Position: -159
Score: 3.8
Sequence: TGGAAGGTAAAATGACC
Locus tag: BPUM_3198
Name: degU
Funciton: Transcriptional regulator essential for degradative enzyme expression and competence regulation, OmpR family
degU
Transcriptional regulator essential for degradative enzyme expression and competence regulation, OmpR family

Position: -89
Score: 3.4
Sequence: TTATGTAATAACTTACA
Locus tag: BPUM_1615
Name: rapJ
Funciton: Response regulator aspartate phosphatase I (EC 3.1.-.-)
rapJ
Response regulator aspartate phosphatase I (EC 3.1.-.-)

Position: -183
Score: 3.8
Sequence: TTAAATAAATTCTTTCA
Position: -141
Score: 3.7
Sequence: TGAAAGAATTTTTCATA
Locus tag: BPUM_0343
Name: yclF
Funciton: Di-tripeptide-proton ABC symporter
yclF
Di-tripeptide-proton ABC symporter

Position: -82
Score: 4.1
Sequence: TGAGAGATTTTCTATCG
Locus tag: BPUM_1193
Name: ykgA
Funciton: Arginine deiminase (EC 3.5.3.6)
ykgA
Arginine deiminase (EC 3.5.3.6)

Position: -121
Score: 5
Sequence: TGTAAGATATTCTTTCA
Locus tag: BPUM_3499
Name: ywoF
Funciton: Pectin lyase like protein
ywoF
Pectin lyase like protein
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD