Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of TnrA in Bacillus licheniformis DSM 13

Properties
Regulator type: Transcription factor
TF locus tag: BLi01490
Regulator family: MerR
Regulation mode: repressor (activator)
Biological process: Nitrogen assimilation
Effector: NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase
Regulog: TnrA - Bacillales
Statistics of regulated genes:
- Genes 64
- Operons 31
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 304 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -87
Score: 4.7
Sequence: TGTTAGTAAAGCTTACA
Locus tag: BLi00365
Name: nasA
Funciton: Nitrate/nitrite transporter
nasA
Nitrate/nitrite transporter

Position: -51
Score: 4.8
Sequence: TGTTAGAAAACTTAACA
Locus tag: BLi02069
Name: alsT
Funciton: Sodium/alanine symporter family protein
alsT
Sodium/alanine symporter family protein

Position: -154
Score: 4.6
Sequence: TGATAGAAAATGTGACG
Position: -39
Score: 4.8
Sequence: TGTTAAAAAATTTAACA
Locus tag: BLi03438
Name: arcD
Funciton: Arginine/ornithine antiporter ArcD
arcD
Arginine/ornithine antiporter ArcD

Position: -40
Score: 4.7
Sequence: TGTTAAATAATTTCACA
Locus tag: BLi01206
Name: argC
Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Locus tag: BLi01207
Name: argJ
Funciton: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
Locus tag: BLi01208
Name: argB
Funciton: Acetylglutamate kinase (EC 2.7.2.8)
Locus tag: BLi01209
Name: argD
Funciton: Acetylornithine aminotransferase (EC 2.6.1.11)
Locus tag: BLi01210
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: BLi01211
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: BLi01212
Name: argF
Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3)
argC
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
argJ
Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
argB
Acetylglutamate kinase (EC 2.7.2.8)
argD
Acetylornithine aminotransferase (EC 2.6.1.11)
carA
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
carB
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
argF
Ornithine carbamoyltransferase (EC 2.1.3.3)

Position: -383
Score: 4.3
Sequence: TGGCAAAAAATCTAACC
Position: -339
Score: 4.5
Sequence: CGGGATAAAATCTAACA
Locus tag: BLi02962
Name: ilvE
Funciton: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
ilvE
Branched-chain amino acid aminotransferase (EC 2.6.1.42)

Position: -81
Score: 4.2
Sequence: TGTAAAGAATCCTTACA
Position: -58
Score: 5
Sequence: TGACACATTATATAACA
Locus tag: BLi01992
Name: glnR
Funciton: Transcriptional regulator of nitrogen excess response, MerR family
Locus tag: BLi01993
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
glnR
Transcriptional regulator of nitrogen excess response, MerR family
glnA
Glutamine synthetase type I (EC 6.3.1.2)

Position: -54
Score: 4.9
Sequence: TGTAAGATTTTATGACC
Locus tag: BLi02162
Name: gltA
Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: BLi02161
Name: gltB
Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
gltA
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
gltB
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)

Position: -111
Score: 4.9
Sequence: GGTCATAAAATCTTACA
Locus tag: BLi02163
Name: gltC
Funciton: Transcriptional regulator of glutamate biosynthesis (LysR family)
gltC
Transcriptional regulator of glutamate biosynthesis (LysR family)

Position: -248
Score: 4.5
Sequence: TGTAATAAAATATCACT
Locus tag: BLi02324
Name: ilvD
Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9)
ilvD
Dihydroxy-acid dehydratase (EC 4.2.1.9)

Position: -147
Score: 4.8
Sequence: TGGAATATAACCTGACA
Locus tag: BLi04348
Name: nagA
Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Locus tag: BLi04349
Name: nagB
Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Locus tag: BLi04350
Name: nagR
Funciton: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family
Locus tag: BLi04351
Name: null
Funciton: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)
Locus tag: BLi04352
Name: nagP
Funciton: PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
nagA
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
nagB
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
nagR
Transcriptional regulator of N-Acetylglucosamine utilization, GntR family
N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)
nagP
PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)

Position: -87
Score: 5
Sequence: TGTCAGGAAATGTAACA
Locus tag: BLi00482
Name: nasB
Funciton: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Locus tag: BLi00483
Name: nasC
Funciton: Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
Locus tag: BLi00484
Name: nasD
Funciton: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Locus tag: BLi00485
Name: nasE
Funciton: Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
Locus tag: BLi00486
Name: nasF
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
nasB
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
nasC
Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
nasD
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
nasE
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
nasF
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)

Position: -103
Score: 5.2
Sequence: TGTAAGGAAATCTGACA
Locus tag: BLi03888
Name: nrgA
Funciton: Ammonium transporter
Locus tag: BLi03889
Name: nrgB
Funciton: Nitrogen regulatory protein P-II
nrgA
Ammonium transporter
nrgB
Nitrogen regulatory protein P-II

Position: -249
Score: 4.9
Sequence: TGGCAGAAAACCTGACA
Locus tag: BLi01232
Name: oppA
Funciton: Oligopeptide ABC transporter (binding lipoprotein)
Locus tag: BLi01233
Name: oppB
Funciton: Oligopeptide ABC transporter (permease)
Locus tag: BLi01234
Name: oppC
Funciton: Oligopeptide ABC transporter (permease)
Locus tag: BLi01235
Name: oppD
Funciton: Oligopeptide ABC transporter (ATP-binding protein)
Locus tag: BLi01236
Name: oppF
Funciton: Oligopeptide ABC transporter (ATP-binding protein)
oppA
Oligopeptide ABC transporter (binding lipoprotein)
oppB
Oligopeptide ABC transporter (permease)
oppC
Oligopeptide ABC transporter (permease)
oppD
Oligopeptide ABC transporter (ATP-binding protein)
oppF
Oligopeptide ABC transporter (ATP-binding protein)

Position: -114
Score: 4.6
Sequence: TGTCATAAAATTTGAAA
Locus tag: BLi01404
Name: pel
Funciton: Pectate lyase precursor (EC 4.2.2.2)
pel
Pectate lyase precursor (EC 4.2.2.2)

Position: -264
Score: 4.1
Sequence: GGGAATAAAAACTGACA
Locus tag: BLi03835
Name: pgdS
Funciton: Gamma-DL-glutamyl hydrolase PgsS (EC 3.4.19.-)
pgdS
Gamma-DL-glutamyl hydrolase PgsS (EC 3.4.19.-)

Position: -43
Score: 4.6
Sequence: TGTAAAGAAATATAACA
Locus tag: BLi03435
Name: pucF
Funciton: Allantoate amidohydrolase (EC 3.5.3.9)
Locus tag: BLi03434
Name: pucG
Funciton: Serine--pyruvate aminotransferase (EC 2.6.1.51) / L-alanine:glyoxylate aminotransferase (EC 2.6.1.44)
pucF
Allantoate amidohydrolase (EC 3.5.3.9)
pucG
Serine--pyruvate aminotransferase (EC 2.6.1.51) / L-alanine:glyoxylate aminotransferase (EC 2.6.1.44)

Position: -138
Score: 4.6
Sequence: TGTTATATTTCTTTACA
Locus tag: BLi03436
Name: pucR
Funciton: Transcriptional regulator of the purine degradation operon, PucR family
pucR
Transcriptional regulator of the purine degradation operon, PucR family

Position: -166
Score: 4.1
Sequence: TGGAATGTATTTTCACA
Locus tag: BLi02719
Name: recO
Funciton: DNA recombination and repair protein RecO
recO
DNA recombination and repair protein RecO

Position: -124
Score: 3.8
Sequence: TGTAAACTTTTCTTCCG
Position: -81
Score: 5.6
Sequence: TGTTAGATTTTCTGACA
Locus tag: BLi01490
Name: tnrA
Funciton: Transcriptional regulator of nitrogen assimilation, MerR family
tnrA
Transcriptional regulator of nitrogen assimilation, MerR family

Position: 1
Score: 3.9
Sequence: TGAAAGATTTTTTAATA
Locus tag: BLi00450
Name: null
Funciton: Hypothetical protein
Locus tag: BLi00451
Name: yclG
Funciton: Pectate lyase family protein
Hypothetical protein
yclG
Pectate lyase family protein

Position: -155
Score: 4.6
Sequence: TGTGAGGTTTCCTAACA
Locus tag: BLi00498
Name: lamB
Funciton: Lactam utilization protein LamB
Locus tag: BLi00499
Name: ycsG
Funciton: Permease (transport protein)
Locus tag: BLi00500
Name: ycsI
Funciton: Hypothetical protein
Locus tag: BLi00501
Name: kipI
Funciton: Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)
Locus tag: BLi00502
Name: kipA
Funciton: Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)
Locus tag: BLi00503
Name: kipR
Funciton: Transcriptional regulator of initiation of developmental transcription at the onset of sporulation, IclR family
lamB
Lactam utilization protein LamB
ycsG
Permease (transport protein)
ycsI
Hypothetical protein
kipI
Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)
kipA
Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)
kipR
Transcriptional regulator of initiation of developmental transcription at the onset of sporulation, IclR family

Position: 3
Score: 4.3
Sequence: CGTCACATAATCTCACC
Locus tag: BLi00300
Name: ydaB
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
ydaB
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)

Position: -62
Score: 4.9
Sequence: TGTGATTAAATCTGACA
Locus tag: BLi02277
Name: yhjC
Funciton: Hypothetical protein
Locus tag: BLi02278
Name: yodF
Funciton: Na+/solute symporter
yhjC
Hypothetical protein
yodF
Na+/solute symporter

Position: -66
Score: 4.8
Sequence: TGTCATATTATATCACG
Locus tag: BLi03102
Name: braB
Funciton: Branched-chain amino acid transport system carrier protein
braB
Branched-chain amino acid transport system carrier protein

Position: -76
Score: 4.9
Sequence: TGTTATATTTTCTGACT
Locus tag: BLi03391
Name: yuiA
Funciton: Uncharacterized conserved protein contain two CXXC motifs
Locus tag: BLi03390
Name: yuiB
Funciton: Hypothetical protein
Locus tag: BLi03389
Name: yuiC
Funciton: Hypothetical protein
yuiA
Uncharacterized conserved protein contain two CXXC motifs
yuiB
Hypothetical protein
yuiC
Hypothetical protein

Position: -167
Score: 3.6
Sequence: TTTTGTAAATTGTATCA
Position: -91
Score: 3.8
Sequence: CGTTAGTTTTTCTTCCC
Locus tag: BLi03850
Name: ywrD
Funciton: Gamma-glutamyltranspeptidase (EC 2.3.2.2)
ywrD
Gamma-glutamyltranspeptidase (EC 2.3.2.2)

Position: -84
Score: 4.3
Sequence: TGTCAGATTTTCTGGCT
Locus tag: BLi01401
Name: ykgA
Funciton: Arginine deiminase (EC 3.5.3.6)
ykgA
Arginine deiminase (EC 3.5.3.6)

Position: -180
Score: 3.9
Sequence: TATTAAAAAATCTTTCA
Locus tag: BLi00449
Name: yclF
Funciton: Di-tripeptide-proton ABC symporter
yclF
Di-tripeptide-proton ABC symporter

Position: -172
Score: 4.3
Sequence: TGTTATAAAACTTAACG
Position: -59
Score: 3.9
Sequence: TGATAAGAAACATAACA
Position: -37
Score: 4.6
Sequence: CGTAATATAACCTTACA
Locus tag: BLi01176
Name: nrgB2
Funciton: Nitrogen regulatory protein P-II
Locus tag: BLi01175
Name: nrgA2
Funciton: Ammonium transporter
nrgB2
Nitrogen regulatory protein P-II
nrgA2
Ammonium transporter

Position: -107
Score: 4.1
Sequence: TGTGAAAAATTATTACT
Locus tag: BLi03446
Name: rapJ
Funciton: Response regulator aspartate phosphatase I (EC 3.1.-.-)
rapJ
Response regulator aspartate phosphatase I (EC 3.1.-.-)

Position: -225
Score: 4.7
Sequence: TTTTACATTATGTAACA
Position: -215
Score: 3.6
Sequence: TGTAACAAACTTTCAAA
Position: -106
Score: 3.7
Sequence: TTTAATATTTACTGATA
Locus tag: BLi02096
Name: brnQ
Funciton: Branched-chain amino acid transport system carrier protein
Locus tag: BLi02095
Name: ywoF
Funciton: Pectin lyase like protein
brnQ
Branched-chain amino acid transport system carrier protein
ywoF
Pectin lyase like protein
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