Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of TnrA in Bacillus halodurans C-125

Properties
Regulator type: Transcription factor
TF locus tag: BH1494
Regulator family: MerR
Regulation mode: repressor (activator)
Biological process: Nitrogen assimilation
Effector: NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase
Regulog: TnrA - Bacillales
Statistics of regulated genes:
- Genes 50
- Operons 21
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 304 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -191
Score: 3.9
Sequence: TGTCATTTAATGCATCA
Locus tag: BH1772
Name: alsT
Funciton: Sodium/alanine symporter family protein
alsT
Sodium/alanine symporter family protein

Position: -260
Score: 4.5
Sequence: TGTCATAAAGCCTAACA
Position: -71
Score: 4.2
Sequence: TATCAGAAAATATAAAA
Locus tag: BH2309
Name: pucH
Funciton: Allantoinase (EC 3.5.2.5)
Locus tag: BH2308
Name: arcD
Funciton: Arginine/ornithine antiporter ArcD
pucH
Allantoinase (EC 3.5.2.5)
arcD
Arginine/ornithine antiporter ArcD

Position: -158
Score: 5.6
Sequence: TGTCAGATTATCTTACA
Locus tag: BH2360
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
glnA
Glutamine synthetase type I (EC 6.3.1.2)

Position: -217
Score: 4.2
Sequence: TGTTAGCCTATTTGACA
Position: -127
Score: 5.5
Sequence: TGTCATAATATCTAACA
Locus tag: BH3820
Name: gltT
Funciton: H(+)/sodium-glutamate symporter
gltT
H(+)/sodium-glutamate symporter

Position: -93
Score: 4.1
Sequence: TGCTAGAAATTCTGGCA
Locus tag: BH3061
Name: ilvB
Funciton: Acetolactate synthase large subunit (EC 2.2.1.6)
ilvB
Acetolactate synthase large subunit (EC 2.2.1.6)

Position: -178
Score: 4.6
Sequence: TGTTAGTAGATATAACA
Locus tag: BH0421
Name: nagA
Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Locus tag: BH0420
Name: nagB
Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
nagA
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
nagB
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)

Position: -145
Score: 4.6
Sequence: TGTTATATCTACTAACA
Locus tag: BH0422
Name: nagP
Funciton: PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
nagP
PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)

Position: -80
Score: 4.6
Sequence: TGTAAGATATCCTCCCA
Locus tag: BH0612
Name: BH0612
Funciton: Nitrate/nitrite transporter
Locus tag: BH0613
Name: nasD
Funciton: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Locus tag: BH0614
Name: nasE
Funciton: Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
Locus tag: BH0615
Name: nasC
Funciton: Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
BH0612
Nitrate/nitrite transporter
nasD
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
nasE
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
nasC
Assimilatory nitrate reductase large subunit (EC:1.7.99.4)

Position: -138
Score: 4
Sequence: TGTCAGATATAGGCACA
Position: -113
Score: 4.9
Sequence: TGTCTGATTATCTGACA
Position: -41
Score: 4.3
Sequence: TATTAGAAAAACTTACA
Locus tag: BH3834
Name: nrgA
Funciton: Ammonium transporter
Locus tag: BH3833
Name: BH3833
Funciton: Predicted nucleotidyltransferase DUF294 family
Locus tag: BH3832
Name: dpo3
Funciton: DNA polymerase III, epsilon subunit
nrgA
Ammonium transporter
BH3833
Predicted nucleotidyltransferase DUF294 family
dpo3
DNA polymerase III, epsilon subunit

Position: -180
Score: 4.3
Sequence: TGTGAGATAATTTAGCA
Locus tag: BH3641
Name: BH3641
Funciton: Transcriptional regulator, Lrp/AsnC family
Locus tag: BH3640
Name: oppD
Funciton: Oligopeptide ABC transporter ATP-binding protein
Locus tag: BH3639
Name: oppF
Funciton: Oligopeptide ABC transporter ATP-binding protein
Locus tag: BH3638
Name: appB
Funciton: Oligopeptide ABC transporter (permease)
Locus tag: BH3637
Name: oppC
Funciton: Oligopeptide ABC transporter permease
Locus tag: BH3636
Name: oppA
Funciton: Oligopeptide ABC transporter substrate-binding protein
BH3641
Transcriptional regulator, Lrp/AsnC family
oppD
Oligopeptide ABC transporter ATP-binding protein
oppF
Oligopeptide ABC transporter ATP-binding protein
appB
Oligopeptide ABC transporter (permease)
oppC
Oligopeptide ABC transporter permease
oppA
Oligopeptide ABC transporter substrate-binding protein

Position: -301
Score: 4.8
Sequence: TGTTAGGATTTTTAACA
Position: -196
Score: 4.2
Sequence: TGTTAAAAAACTTCACA
Locus tag: BH0758
Name: BH0758
Funciton: Uricase (EC 1.7.3.3)
Locus tag: BH0759
Name: pucL
Funciton: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase (EC 4.1.1.n1) / Uricase (EC 1.7.3.3)
Locus tag: BH0760
Name: pucM
Funciton: 5-hydroxyisourate hydrolase
Locus tag: BH0761
Name: BH0761
Funciton: N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87)
Locus tag: BH0762
Name: pucG
Funciton: Serine--pyruvate aminotransferase (EC 2.6.1.51) / L-alanine:glyoxylate aminotransferase (EC 2.6.1.44)
BH0758
Uricase (EC 1.7.3.3)
pucL
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase (EC 4.1.1.n1) / Uricase (EC 1.7.3.3)
pucM
5-hydroxyisourate hydrolase
BH0761
N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87)
pucG
Serine--pyruvate aminotransferase (EC 2.6.1.51) / L-alanine:glyoxylate aminotransferase (EC 2.6.1.44)

Position: -245
Score: 4
Sequence: TGATAAGTTACCTTACA
Locus tag: BH0746
Name: BH0746
Funciton: N-ethylammeline chlorohydrolase
BH0746
N-ethylammeline chlorohydrolase

Position: -191
Score: 4.2
Sequence: TGTGAAGTTTTTTAACA
Position: -86
Score: 4.8
Sequence: TGTTAAAAATCCTAACA
Position: 31
Score: 4.5
Sequence: TGTTAGATCTTCCAACA
Locus tag: BH0757
Name: pucR
Funciton: Transcriptional regulator of the purine degradation operon, PucR family
pucR
Transcriptional regulator of the purine degradation operon, PucR family

Position: -216
Score: 4.4
Sequence: TGCAAGAAAATGTCACA
Locus tag: BH1368
Name: yqzL
Funciton: Hypothetical protein
Locus tag: BH1369
Name: recO
Funciton: DNA recombination and repair protein RecO
yqzL
Hypothetical protein
recO
DNA recombination and repair protein RecO

Position: -110
Score: 5.5
Sequence: TGTAAGAAAATCTAACA
Locus tag: BH1494
Name: tnrA
Funciton: Transcriptional regulator of nitrogen assimilation, MerR family
tnrA
Transcriptional regulator of nitrogen assimilation, MerR family

Position: -192
Score: 4.5
Sequence: TGTTATCTTTGATGACA
Position: -157
Score: 5
Sequence: TGTTAGAAAAGATTACA
Position: -88
Score: 4.4
Sequence: TGTAACGATTTCTAACG
Locus tag: BH0251
Name: urtA
Funciton: Urea ABC transporter, urea binding protein
Locus tag: BH0250
Name: urtB
Funciton: Urea ABC transporter, permease protein UrtB
Locus tag: BH0249
Name: urtC
Funciton: Urea ABC transporter, permease protein UrtC
Locus tag: BH0248
Name: utrD
Funciton: Urea ABC transporter, ATPase protein UrtD
Locus tag: BH0247
Name: urtE
Funciton: Urea ABC transporter, ATPase protein UrtE
urtA
Urea ABC transporter, urea binding protein
urtB
Urea ABC transporter, permease protein UrtB
urtC
Urea ABC transporter, permease protein UrtC
utrD
Urea ABC transporter, ATPase protein UrtD
urtE
Urea ABC transporter, ATPase protein UrtE

Position: -165
Score: 4.4
Sequence: CGTTAGAAATCGTTACA
Position: -96
Score: 5
Sequence: TGTAATCTTTTCTAACA
Position: -61
Score: 4.5
Sequence: TGTCATCAAAGATAACA
Locus tag: BH0252
Name: ureA
Funciton: Urease gamma subunit (EC 3.5.1.5)
Locus tag: BH0253
Name: ureB
Funciton: Urease beta subunit (EC 3.5.1.5)
Locus tag: BH0254
Name: ureC
Funciton: Urease alpha subunit (EC 3.5.1.5)
Locus tag: BH0255
Name: ureE
Funciton: Urease accessory protein UreE
Locus tag: BH0256
Name: ureF
Funciton: Urease accessory protein UreF
Locus tag: BH0257
Name: ureG
Funciton: Urease accessory protein UreG
Locus tag: BH0258
Name: ureD
Funciton: Urease accessory protein UreD
ureA
Urease gamma subunit (EC 3.5.1.5)
ureB
Urease beta subunit (EC 3.5.1.5)
ureC
Urease alpha subunit (EC 3.5.1.5)
ureE
Urease accessory protein UreE
ureF
Urease accessory protein UreF
ureG
Urease accessory protein UreG
ureD
Urease accessory protein UreD

Position: -87
Score: 5.1
Sequence: CGTCATAAAATCTAACA
Locus tag: BH1073
Name: ysnE
Funciton: GNAT family acetyltransferase
ysnE
GNAT family acetyltransferase

Position: -86
Score: 4.1
Sequence: TGTGAGAATACCTCGCA
Locus tag: BH3406
Name: yuiA
Funciton: Uncharacterized conserved protein contain two CXXC motifs
Locus tag: BH3405
Name: yuiB
Funciton: Hypothetical protein
Locus tag: BH3404
Name: yuiC
Funciton: Hypothetical protein
yuiA
Uncharacterized conserved protein contain two CXXC motifs
yuiB
Hypothetical protein
yuiC
Hypothetical protein

Position: -277
Score: 4.3
Sequence: TGGCAAAAAAAGTGACA
Position: -125
Score: 4.3
Sequence: TGACAGATTTATTTACA
Locus tag: BH3408
Name: yumC
Funciton: Thioredoxin reductase (EC 1.8.1.9)
yumC
Thioredoxin reductase (EC 1.8.1.9)

Position: -103
Score: 5.7
Sequence: TGTCAGATAATCTAACA
Position: -33
Score: 4.9
Sequence: TGTCACATTACATTACA
Locus tag: BH3867
Name: glnA2
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
glnA2
Glutamine synthetase type I (EC 6.3.1.2)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD