Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of TnrA in Bacillus clausii KSM-K16

Properties
Regulator type: Transcription factor
TF locus tag: ABC1760
Regulator family: MerR
Regulation mode: repressor (activator)
Biological process: Nitrogen assimilation
Effector: NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase
Regulog: TnrA - Bacillales
Statistics of regulated genes:
- Genes 61
- Operons 15
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 304 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -173
Score: 4.2
Sequence: TGTAAACAATCCTAACA
Locus tag: ABC3733
Name: arcD
Funciton: Arginine/ornithine antiporter ArcD
Locus tag: ABC3732
Name: pucH
Funciton: Allantoinase (EC 3.5.2.5)
Locus tag: ABC3731
Name: null
Funciton: Glutamyl-tRNA(Gln) amidotransferase subunit A
arcD
Arginine/ornithine antiporter ArcD
pucH
Allantoinase (EC 3.5.2.5)
Glutamyl-tRNA(Gln) amidotransferase subunit A

Position: -8
Score: 3.4
Sequence: GGACAGCAATGATCACA
Locus tag: ABC0770
Name: glnQ
Funciton: Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
Locus tag: ABC0771
Name: glnH
Funciton: Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)
Locus tag: ABC0772
Name: glnM
Funciton: Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
Locus tag: ABC0773
Name: glnP
Funciton: Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
glnQ
Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
glnH
Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)
glnM
Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
glnP
Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)

Position: -89
Score: 5.2
Sequence: TGTCACAAAATATTACA
Locus tag: ABC1620
Name: nasF
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
Locus tag: ABC1621
Name: nasD
Funciton: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Locus tag: ABC1622
Name: nasE
Funciton: Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
Locus tag: ABC1623
Name: nasB
Funciton: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Locus tag: ABC1624
Name: nasC
Funciton: Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
Locus tag: ABC1625
Name: nasA
Funciton: Nitrate/nitrite transporter
nasF
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
nasD
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
nasE
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
nasB
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
nasC
Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
nasA
Nitrate/nitrite transporter

Position: -84
Score: 5.2
Sequence: TGTTAGATATCCTGACA
Locus tag: ABC3928
Name: nrgA
Funciton: Ammonium transporter
Locus tag: ABC3927
Name: null
Funciton: Predicted nucleotidyltransferase DUF294 family
Locus tag: ABC3926
Name: dpo3
Funciton: DNA polymerase III, epsilon subunit
nrgA
Ammonium transporter
Predicted nucleotidyltransferase DUF294 family
dpo3
DNA polymerase III, epsilon subunit

Position: -139
Score: 5.7
Sequence: TGTCAGATTTTCTGACA
Locus tag: ABC0565
Name: gsiC
Funciton: Glutathione transport system permease
Locus tag: ABC0566
Name: gsiD
Funciton: Glutathione transport system permease
Locus tag: ABC0567
Name: appD
Funciton: Glutathione import ATP-binding protein
Locus tag: ABC0568
Name: appF
Funciton: Glutathione import ATP-binding protein
gsiC
Glutathione transport system permease
gsiD
Glutathione transport system permease
appD
Glutathione import ATP-binding protein
appF
Glutathione import ATP-binding protein

Position: -135
Score: 5.1
Sequence: TGTTAGAAAACATAACA
Locus tag: ABC1238
Name: appD
Funciton: Glutathione import ATP-binding protein
Locus tag: ABC1239
Name: appF
Funciton: Glutathione import ATP-binding protein
Locus tag: ABC1240
Name: gsiA
Funciton: Glutathione import ATP-binding protein
Locus tag: ABC1241
Name: gsiC
Funciton: Glutathione transport system permease
Locus tag: ABC1242
Name: gsiD
Funciton: Glutathione transport system permease
appD
Glutathione import ATP-binding protein
appF
Glutathione import ATP-binding protein
gsiA
Glutathione import ATP-binding protein
gsiC
Glutathione transport system permease
gsiD
Glutathione transport system permease

Position: -446
Score: 5
Sequence: TGTTATATCTTCTTACA
Locus tag: ABC3095
Name: null
Funciton: Transcriptional regulator, Lrp/AsnC family
Locus tag: ABC3094
Name: oppD
Funciton: Oligopeptide ABC transporter ATP-binding protein
Locus tag: ABC3093
Name: oppF
Funciton: Oligopeptide ABC transporter ATP-binding protein
Locus tag: ABC3092
Name: appB
Funciton: Oligopeptide ABC transporter (permease)
Locus tag: ABC3091
Name: oppC
Funciton: Oligopeptide ABC transporter permease
Locus tag: ABC3090
Name: oppA
Funciton: Oligopeptide ABC transporter substrate-binding protein
Transcriptional regulator, Lrp/AsnC family
oppD
Oligopeptide ABC transporter ATP-binding protein
oppF
Oligopeptide ABC transporter ATP-binding protein
appB
Oligopeptide ABC transporter (permease)
oppC
Oligopeptide ABC transporter permease
oppA
Oligopeptide ABC transporter substrate-binding protein

Position: -111
Score: 4.2
Sequence: TGTGAGAAAATCTATTA
Locus tag: ABC2416
Name: appD
Funciton: Oligopeptide ABC transporter (ATP-binding protein)
Locus tag: ABC2415
Name: appF
Funciton: oligopeptide ABC transporter (ATP-binding protein)
Locus tag: ABC2414
Name: appA
Funciton: Oligopeptide ABC transporter (substrate-binding)
Locus tag: ABC2413
Name: appB
Funciton: Oligopeptide ABC transporter (permease)
Locus tag: ABC2412
Name: appC
Funciton: Oligopeptide ABC transporter (permease)
appD
Oligopeptide ABC transporter (ATP-binding protein)
appF
oligopeptide ABC transporter (ATP-binding protein)
appA
Oligopeptide ABC transporter (substrate-binding)
appB
Oligopeptide ABC transporter (permease)
appC
Oligopeptide ABC transporter (permease)

Position: -558
Score: 4.3
Sequence: TGTAAGATTTCTTATCA
Locus tag: ABC3661
Name: appA
Funciton: Oligopeptide ABC transporter (oligopeptide-binding protein)
Locus tag: ABC3660
Name: appB
Funciton: Oligopeptide ABC transporter (permease)
Locus tag: ABC3659
Name: null
Funciton: Oligopeptide ABC transporter (permease)
Locus tag: ABC3658
Name: appD
Funciton: Oligopeptide ABC transporter (ATP-binding protein)
Locus tag: ABC3657
Name: oppF
Funciton: Oligopeptide ABC transporter (ATP-binding protein)
Locus tag: ABC3656
Name: null
Funciton: Peptidase
Locus tag: ABC3655
Name: null
Funciton: Sodium-dependent dicarboxylate transporter
Locus tag: ABC3654
Name: null
Funciton: N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14)
Locus tag: ABC3653
Name: null
Funciton: N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14)
appA
Oligopeptide ABC transporter (oligopeptide-binding protein)
appB
Oligopeptide ABC transporter (permease)
Oligopeptide ABC transporter (permease)
appD
Oligopeptide ABC transporter (ATP-binding protein)
oppF
Oligopeptide ABC transporter (ATP-binding protein)
Peptidase
Sodium-dependent dicarboxylate transporter
N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14)
N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14)

Position: -321
Score: 4.1
Sequence: CGTAAAGAAATGTAACA
Position: -212
Score: 5.2
Sequence: TGTCAGAGAATCTGACA
Locus tag: ABC4033
Name: null
Funciton: Cytosine/purine/uracil/thiamine/allantoin permease family protein
Locus tag: ABC4032
Name: null
Funciton: Cytosine deaminase (EC 3.5.4.1)
Cytosine/purine/uracil/thiamine/allantoin permease family protein
Cytosine deaminase (EC 3.5.4.1)

Position: -270
Score: 4.5
Sequence: TGTGAAAAAACCTTACA
Position: -141
Score: 4
Sequence: GGGGAGAAGATCTAACA
Locus tag: ABC3747
Name: null
Funciton: Nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein
Locus tag: ABC3746
Name: null
Funciton: Nitrate/sulfonate/bicarbonate ABC transporter permease
Locus tag: ABC3745
Name: null
Funciton: Nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
Locus tag: ABC3744
Name: pucA
Funciton: Xanthine dehydrogenase subunit A
Locus tag: ABC3743
Name: pucB
Funciton: Xanthine dehydrogenase
Locus tag: ABC3742
Name: pucC
Funciton: Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4)
Locus tag: ABC3741
Name: pucD
Funciton: Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)
Locus tag: ABC3740
Name: pucE
Funciton: Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4)
Nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein
Nitrate/sulfonate/bicarbonate ABC transporter permease
Nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
pucA
Xanthine dehydrogenase subunit A
pucB
Xanthine dehydrogenase
pucC
Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4)
pucD
Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)
pucE
Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4)

Position: -173
Score: 4.2
Sequence: TGTAAACAATCCTAACA
Locus tag: ABC3733
Name: arcD
Funciton: Arginine/ornithine antiporter ArcD
Locus tag: ABC3732
Name: pucH
Funciton: Allantoinase (EC 3.5.2.5)
Locus tag: ABC3731
Name: null
Funciton: Glutamyl-tRNA(Gln) amidotransferase subunit A
arcD
Arginine/ornithine antiporter ArcD
pucH
Allantoinase (EC 3.5.2.5)
Glutamyl-tRNA(Gln) amidotransferase subunit A

Position: -99
Score: 5.5
Sequence: TGTTAGATTTTCTTACA
Position: -57
Score: 5
Sequence: TGTGATATATTGTTACA
Locus tag: ABC1760
Name: tnrA
Funciton: Transcriptional regulator of nitrogen assimilation, MerR family
tnrA
Transcriptional regulator of nitrogen assimilation, MerR family

Position: -181
Score: 4.8
Sequence: TGACAGAAAATCTTCCA
Locus tag: ABC3708
Name: yrbD
Funciton: Sodium/proton-dependent alanine transporter
yrbD
Sodium/proton-dependent alanine transporter

Position: -103
Score: 5.7
Sequence: TGTCAGATAATCTGACA
Locus tag: ABC3940
Name: glnA2
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
glnA2
Glutamine synthetase type I (EC 6.3.1.2)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD