Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NtcB in Synechococcus elongatus PCC 7942

Properties
Regulator type: Transcription factor
TF locus tag: Synpcc7942_1242
Regulator family: LysR
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Nitrite
Regulog: NtcB - Cyanobacteria
Statistics of regulated genes:
- Genes 10
- Operons 3
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 44 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -109
Score: 4.3
Sequence: TTGCAGAACATGCAT
Locus tag: Synpcc7942_1240
Name: nirA
Funciton: ferredoxin--nitrite reductase
Locus tag: Synpcc7942_1239
Name: nrtA
Funciton: nitrate/nitrite ABC transport system, substrate-binding protein
Locus tag: Synpcc7942_1238
Name: nrtB
Funciton: nitrate/nitrite ABC transport system, permease protein
Locus tag: Synpcc7942_1237
Name: nrtC
Funciton: nitrate/nitrite ABC transport system, ATP-binding protein
Locus tag: Synpcc7942_1236
Name: nrtD
Funciton: nitrate/nitrite ABC transport system, ATP-binding protein
Locus tag: Synpcc7942_1235
Name: narB
Funciton: nitrate reductase
nirA
ferredoxin--nitrite reductase
nrtA
nitrate/nitrite ABC transport system, substrate-binding protein
nrtB
nitrate/nitrite ABC transport system, permease protein
nrtC
nitrate/nitrite ABC transport system, ATP-binding protein
nrtD
nitrate/nitrite ABC transport system, ATP-binding protein
narB
nitrate reductase

Position: -192
Score: 4.3
Sequence: ATGCATGTTCTGCAA
Locus tag: Synpcc7942_1241
Name: null
Funciton: nitrite reductase related protein
Locus tag: Synpcc7942_1242
Name: ntcB
Funciton: nitrogen assimilation transcriptional activator NtcB
nitrite reductase related protein
ntcB
nitrogen assimilation transcriptional activator NtcB

Position: -33
Score: 4
Sequence: ATGCAATTCATTCAA
Locus tag: Synpcc7942_1175
Name: psbL
Funciton: photosystem II protein L
Locus tag: Synpcc7942_1174
Name: psbJ
Funciton: photosystem II protein J
psbL
photosystem II protein L
psbJ
photosystem II protein J
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD