Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NtcB in Nostoc sp. PCC 7120

Properties
Regulator type: Transcription factor
TF locus tag: all0602
Regulator family: LysR
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Nitrite
Regulog: NtcB - Cyanobacteria
Statistics of regulated genes:
- Genes 13
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 44 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -562
Score: 4.8
Sequence: ATGCAGAAAACGCAT
Locus tag: alr0607
Name: nirA
Funciton: ferredoxin--nitrite reductase
Locus tag: alr0608
Name: nrtA
Funciton: nitrate/nitrite ABC transport system, substrate-binding protein
Locus tag: alr0609
Name: nrtB
Funciton: nitrate/nitrite ABC transport system, permease protein
Locus tag: alr0610
Name: nrtC
Funciton: nitrate/nitrite ABC transport system, ATP-binding protein
Locus tag: alr0611
Name: nrtD
Funciton: nitrate/nitrite ABC transport system, ATP-binding protein
Locus tag: alr0612
Name: narB
Funciton: nitrate reductase
nirA
ferredoxin--nitrite reductase
nrtA
nitrate/nitrite ABC transport system, substrate-binding protein
nrtB
nitrate/nitrite ABC transport system, permease protein
nrtC
nitrate/nitrite ABC transport system, ATP-binding protein
nrtD
nitrate/nitrite ABC transport system, ATP-binding protein
narB
nitrate reductase

Position: -135
Score: 4.4
Sequence: ATGCAATTTTTACAA
Locus tag: all3335
Name: nrtB
Funciton: nitrate/nitrite ABC transport system, permease protein
Locus tag: all3334
Name: nrtC
Funciton: nitrate/nitrite ABC transport system, ATP-binding protein
Locus tag: all3333
Name: nrtA
Funciton: nitrate/nitrite ABC transport system, substrate-binding protein
nrtB
nitrate/nitrite ABC transport system, permease protein
nrtC
nitrate/nitrite ABC transport system, ATP-binding protein
nrtA
nitrate/nitrite ABC transport system, substrate-binding protein

Position: -31
Score: 3.9
Sequence: ATGCCGTAAATGTAA
Locus tag: all0602
Name: ntcB
Funciton: nitrogen assimilation transcriptional activator NtcB
ntcB
nitrogen assimilation transcriptional activator NtcB

Position: -41
Score: 4.2
Sequence: ATGCAGTTTATTCAA
Locus tag: asr3847
Name: psbL
Funciton: photosystem II protein L
Locus tag: asr3848
Name: psbJ
Funciton: photosystem II protein J
psbL
photosystem II protein L
psbJ
photosystem II protein J

Position: -257
Score: 4.3
Sequence: ATGCGGTACTTGTAT
Locus tag: asl0883
Name: psbM
Funciton: photosystem II reaction centre M protein
psbM
photosystem II reaction centre M protein
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