Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NtcB in Cyanothece sp. ATCC 51142

Properties
Regulator type: Transcription factor
TF locus tag: cce_0198
Regulator family: LysR
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Nitrite
Regulog: NtcB - Cyanobacteria
Statistics of regulated genes:
- Genes 7
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 44 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -127
Score: 4.7
Sequence: ATGCAAAAAATCCAT
Position: -105
Score: 4.1
Sequence: ATGCAAAAAACGGAT
Locus tag: cce_1223
Name: nirA
Funciton: ferredoxin--nitrite reductase
Locus tag: cce_1222
Name: nrtP
Funciton: nitrate/nitrite transporter
nirA
ferredoxin--nitrite reductase
nrtP
nitrate/nitrite transporter

Position: -125
Score: 3.6
Sequence: AGACAAAAACTCCAT
Locus tag: cce_0198
Name: ntcB
Funciton: nitrogen assimilation transcriptional activator NtcB
ntcB
nitrogen assimilation transcriptional activator NtcB

Position: -31
Score: 4.2
Sequence: ATGCAGTTTATTCAA
Locus tag: cce_1304
Name: psbL
Funciton: photosystem II protein L
Locus tag: cce_1303
Name: psbJ
Funciton: photosystem II protein J
psbL
photosystem II protein L
psbJ
photosystem II protein J

Position: -247
Score: 4.2
Sequence: ATGTGGAACCTGCAT
Locus tag: cce_0893
Name: psbM
Funciton: photosystem II reaction centre M protein
psbM
photosystem II reaction centre M protein

Position: -69
Score: 4.4
Sequence: ATGCGTTTTTTGTAT
Locus tag: cce_1062
Name: yrdC
Funciton: putative YrdC-like RNA-binding protein
yrdC
putative YrdC-like RNA-binding protein
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