Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NtcB in Synechococcus sp. PCC 7002

Properties
Regulator type: Transcription factor
TF locus tag: SYNPCC7002_A1632
Regulator family: LysR
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Nitrite
Regulog: NtcB - Cyanobacteria
Statistics of regulated genes:
- Genes 6
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 44 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -162
Score: 4
Sequence: ATGCGGCGATCGCAT
Locus tag: SYNPCC7002_A1827
Name: nirA
Funciton: ferredoxin--nitrite reductase
nirA
ferredoxin--nitrite reductase

Position: -56
Score: 4.4
Sequence: ATGCAGTAAACTCAT
Locus tag: SYNPCC7002_A1632
Name: ntcB
Funciton: nitrogen assimilation transcriptional activator NtcB
ntcB
nitrogen assimilation transcriptional activator NtcB

Position: -30
Score: 4.2
Sequence: ATGCAGTTTATTCAA
Locus tag: SYNPCC7002_A0232
Name: psbL
Funciton: photosystem II protein L
Locus tag: SYNPCC7002_A0233
Name: psbJ
Funciton: photosystem II protein J
psbL
photosystem II protein L
psbJ
photosystem II protein J

Position: -289
Score: 4.5
Sequence: ATGCGGAACCTGCAT
Locus tag: SYNPCC7002_A2151
Name: psbM
Funciton: photosystem II reaction centre M protein
psbM
photosystem II reaction centre M protein

Position: -51
Score: 4.8
Sequence: ATGCAGCAATTGCAT
Locus tag: SYNPCC7002_A1732
Name: yrdC
Funciton: putative YrdC-like RNA-binding protein
yrdC
putative YrdC-like RNA-binding protein
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