Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NtcA in Thermosynechococcus elongatus BP-1

Properties
Regulator type: Transcription factor
TF locus tag: null
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Regulog: NtcA - Cyanobacteria
Statistics of regulated genes:
- Genes 27
- Operons 14
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 228 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -175
Score: 4.4
Sequence: TGTTAAATTAGATACA
Locus tag: null
Name: gifB
Funciton: Glutamine synthetase inactivating factor IF17
gifB
Glutamine synthetase inactivating factor IF17

Position: -190
Score: 4.4
Sequence: TGTATAACGTGATACA
Locus tag: amt1
Name: amt1
Funciton: ammonium transporter
amt1
ammonium transporter

Position: -63
Score: 4.1
Sequence: AGTATTGGATATTACA
Locus tag: tsr2448
Name: SYNPCC7002_A0076
Funciton: hypothetical protein
SYNPCC7002_A0076
hypothetical protein

Position: -85
Score: 4.3
Sequence: TGTAGTTGAGTTTACA
Locus tag: tlr1468
Name: SYNPCC7002_A2395
Funciton: hypothetical protein
SYNPCC7002_A2395
hypothetical protein

Position: -111
Score: 4.2
Sequence: TGTAACCTATCTTACA
Locus tag: tlr0194
Name: tlr0194
Funciton: hypothetical protein
Locus tag: tlr0195
Name: SYNPCC7002_A1954
Funciton: putative two-component sensor histidine kinase
tlr0194
hypothetical protein
SYNPCC7002_A1954
putative two-component sensor histidine kinase

Position: -80
Score: 5.1
Sequence: TGTAGCTATTGCTACA
Locus tag: tll0591
Name: glnB
Funciton: nitrogen regulatory protein P-II
glnB
nitrogen regulatory protein P-II

Position: -82
Score: 4.6
Sequence: AGTAGCAAAATTTACA
Locus tag: tlr1349
Name: nirA
Funciton: Nitrite reductase, ferredoxin dependent
Locus tag: tlr1350
Name: nrtA
Funciton: Nitrate/nitrite ABC transporter, substrate-binding protein
Locus tag: tlr1351
Name: nrtB
Funciton: Nitrate/nitrite ABC transporter, permease protein
Locus tag: tlr1352
Name: nrtC
Funciton: Nitrate/nitrite ABC transporter, ATP-binding protein 1
Locus tag: tlr1353
Name: tlr1353
Funciton: putative transposase
Locus tag: tlr1354
Name: nrtD
Funciton: Nitrate/nitrite ABC transporter, ATP-binding protein 2
Locus tag: tlr1355
Name: narB
Funciton: Nitrate reductase
nirA
Nitrite reductase, ferredoxin dependent
nrtA
Nitrate/nitrite ABC transporter, substrate-binding protein
nrtB
Nitrate/nitrite ABC transporter, permease protein
nrtC
Nitrate/nitrite ABC transporter, ATP-binding protein 1
tlr1353
putative transposase
nrtD
Nitrate/nitrite ABC transporter, ATP-binding protein 2
narB
Nitrate reductase

Position: -138
Score: 4
Sequence: AGTATTATTCGTTACG
Locus tag: tlr1330
Name: nrrA
Funciton: Transcriptional regulator, OmpR family
nrrA
Transcriptional regulator, OmpR family

Position: -122
Score: 3.9
Sequence: TGTATCAATCAACACA
Locus tag: null
Name: ntcB
Funciton: Nitrogen assimilation transcriptional activator, LysR family
ntcB
Nitrogen assimilation transcriptional activator, LysR family

Position: -195
Score: 3.8
Sequence: AGTTTCTGGAAATACA
Locus tag: null
Name: isiA
Funciton: Iron-stress chlorophyll-binding protein
isiA
Iron-stress chlorophyll-binding protein

Position: -220
Score: 3.6
Sequence: GGTAACTTTTGCTATG
Locus tag: null
Name: ndhF
Funciton: NAD(P)H dehydrogenase subunit (EC 1.6.99.5)
Locus tag: null
Name: ndhD
Funciton: NAD(P)H-quinone oxidoreductase (EC 1.6.5.-)
Locus tag: tlr0906
Name: cupA
Funciton: Carbon dioxide hydration protein
ndhF
NAD(P)H dehydrogenase subunit (EC 1.6.99.5)
ndhD
NAD(P)H-quinone oxidoreductase (EC 1.6.5.-)
cupA
Carbon dioxide hydration protein

Position: -130
Score: 4
Sequence: AGTAGCAATGACAACA
Locus tag: tlr2286
Name: trxQ
Funciton: Thioredoxin
trxQ
Thioredoxin

Position: -146
Score: 4.4
Sequence: TGTTAAATTAGATACA
Locus tag: null
Name: gifB
Funciton: Glutamine synthetase inactivating factor IF17
gifB
Glutamine synthetase inactivating factor IF17

Position: -81
Score: 4
Sequence: TGTAGCCTAGCATACA
Locus tag: tlr1120
Name: urtA
Funciton: Urea ABC transporter, substrate-binding protein
Locus tag: tlr1121
Name: urtB
Funciton: Urea ABC transporter, permease protein 1
Locus tag: tlr1122
Name: urtC
Funciton: Urea ABC transporter, permease protein 2
Locus tag: tlr1123
Name: urtD
Funciton: Urea ABC transporter, ATP-binding protein 1
Locus tag: tlr1124
Name: urtE
Funciton: Urea ABC transporter, ATP-binding protein 2
urtA
Urea ABC transporter, substrate-binding protein
urtB
Urea ABC transporter, permease protein 1
urtC
Urea ABC transporter, permease protein 2
urtD
Urea ABC transporter, ATP-binding protein 1
urtE
Urea ABC transporter, ATP-binding protein 2
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