Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NtcA in Synechococcus sp. WH 8102

Properties
Regulator type: Transcription factor
TF locus tag: SYNW0275
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Regulog: NtcA - Cyanobacteria
Statistics of regulated genes:
- Genes 10
- Operons 4
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 228 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -100
Score: 4.2
Sequence: TGTATCAATTAACACA
Locus tag: SYNW0253
Name: amt1
Funciton: ammonium transporter
amt1
ammonium transporter

Position: -143
Score: 4.1
Sequence: TGTAACTTTGGTTGCA
Locus tag: SYNW0246
Name: SYNPCC7002_A1954
Funciton: putative two-component sensor histidine kinase
SYNPCC7002_A1954
putative two-component sensor histidine kinase

Position: -103
Score: 4.1
Sequence: TGTAGCAAGTGAGACA
Position: -66
Score: 4.5
Sequence: AGTATCACCTGATACA
Locus tag: SYNW2487
Name: cynA
Funciton: cyanate ABC transporter, substrate binding protein
Locus tag: SYNW2486
Name: cynB
Funciton: cyanate ABC transporter, permease protein
Locus tag: SYNW2485
Name: cynD
Funciton: cyanate ABC transporter, ATP-binding protein
cynA
cyanate ABC transporter, substrate binding protein
cynB
cyanate ABC transporter, permease protein
cynD
cyanate ABC transporter, ATP-binding protein

Position: -118
Score: 4
Sequence: TGTTGCAACAGCTACC
Locus tag: SYNW2442
Name: urtA
Funciton: Urea ABC transporter, substrate-binding protein
Locus tag: SYNW2441
Name: urtB
Funciton: Urea ABC transporter, permease protein 1
Locus tag: SYNW2440
Name: urtC
Funciton: Urea ABC transporter, permease protein 2
Locus tag: SYNW2439
Name: urtD
Funciton: Urea ABC transporter, ATP-binding protein 1
Locus tag: SYNW2438
Name: urtE
Funciton: Urea ABC transporter, ATP-binding protein 2
urtA
Urea ABC transporter, substrate-binding protein
urtB
Urea ABC transporter, permease protein 1
urtC
Urea ABC transporter, permease protein 2
urtD
Urea ABC transporter, ATP-binding protein 1
urtE
Urea ABC transporter, ATP-binding protein 2
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