Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NtcA in Synechococcus sp. JA-3-3Ab

Properties
Regulator type: Transcription factor
TF locus tag: CYA_1799
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Regulog: NtcA - Cyanobacteria
Statistics of regulated genes:
- Genes 16
- Operons 9
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 228 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -66
Score: 3.6
Sequence: GCTATTATCAATTACA
Locus tag: CYA_0030
Name: fur
Funciton: Ferric uptake regulator, Fur family
fur
Ferric uptake regulator, Fur family

Position: -139
Score: 3.9
Sequence: GGTAAGATAAAATACA
Position: -81
Score: 4.2
Sequence: CGTATCAAAGGCTACT
Locus tag: CYA_0570
Name: SYNPCC7002_A2395
Funciton: hypothetical protein
SYNPCC7002_A2395
hypothetical protein

Position: -138
Score: 4.3
Sequence: CGTATCAGAAACTACA
Locus tag: CYA_1363
Name: glnA
Funciton: glutamine synthetase, type I
glnA
glutamine synthetase, type I

Position: -74
Score: 4.5
Sequence: TGTATCCGTTTTTACA
Locus tag: CYA_1508
Name: glnB
Funciton: nitrogen regulatory protein P-II
glnB
nitrogen regulatory protein P-II

Position: -72
Score: 3.9
Sequence: TGTAACTGCCAATACC
Locus tag: CYA_0612
Name: nirA
Funciton: Nitrite reductase, ferredoxin dependent
Locus tag: CYA_0613
Name: nrtA
Funciton: Nitrate/nitrite ABC transporter, substrate-binding protein
Locus tag: CYA_0614
Name: nrtB
Funciton: Nitrate/nitrite ABC transporter, permease protein
Locus tag: CYA_0615
Name: nrtC
Funciton: Nitrate/nitrite ABC transporter, ATP-binding protein 1
Locus tag: CYA_0616
Name: nrtD
Funciton: Nitrate/nitrite ABC transporter, ATP-binding protein 2
nirA
Nitrite reductase, ferredoxin dependent
nrtA
Nitrate/nitrite ABC transporter, substrate-binding protein
nrtB
Nitrate/nitrite ABC transporter, permease protein
nrtC
Nitrate/nitrite ABC transporter, ATP-binding protein 1
nrtD
Nitrate/nitrite ABC transporter, ATP-binding protein 2

Position: -181
Score: 4.7
Sequence: TGTAGCTCCTGCTACA
Locus tag: CYA_1799
Name: ntcA
Funciton: Global nitrogen transcription regulator, Crp family
ntcA
Global nitrogen transcription regulator, Crp family

Position: -89
Score: 4.2
Sequence: TGTAACGGTGTTTACA
Locus tag: CYA_0984
Name: ntcB
Funciton: Nitrogen assimilation transcriptional activator, LysR family
ntcB
Nitrogen assimilation transcriptional activator, LysR family

Position: -248
Score: 3.9
Sequence: AGAAACAGAAGCTACA
Locus tag: CYA_1920
Name: urtE
Funciton: Urea ABC transporter, ATP-binding protein 2
urtE
Urea ABC transporter, ATP-binding protein 2

Position: -272
Score: 3.7
Sequence: GGTATCCCGCGATACA
Locus tag: CYA_1924
Name: urtA
Funciton: Urea ABC transporter, substrate-binding protein
Locus tag: CYA_1923
Name: urtB
Funciton: Urea ABC transporter, permease protein 1
Locus tag: CYA_1922
Name: urtC
Funciton: Urea ABC transporter, permease protein 2
Locus tag: CYA_1921
Name: urtD
Funciton: Urea ABC transporter, ATP-binding protein 1
urtA
Urea ABC transporter, substrate-binding protein
urtB
Urea ABC transporter, permease protein 1
urtC
Urea ABC transporter, permease protein 2
urtD
Urea ABC transporter, ATP-binding protein 1
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