Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NtcA in Synechococcus elongatus PCC 7942

Properties
Regulator type: Transcription factor
TF locus tag: Synpcc7942_0127
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Regulog: NtcA - Cyanobacteria
Statistics of regulated genes:
- Genes 19
- Operons 10
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 228 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -151
Score: 4.1
Sequence: TGTTACATCGATTACA
Locus tag: Synpcc7942_0442
Name: amt1
Funciton: ammonium transporter
amt1
ammonium transporter

Position: -27
Score: 4.3
Sequence: TGTATCCGTTGCTACC
Locus tag: Synpcc7942_1845
Name: cce_3797
Funciton: conserved hypothetical protein
cce_3797
conserved hypothetical protein

Position: -67
Score: 4.4
Sequence: TGTAACGACGGCTACA
Locus tag: Synpcc7942_2107
Name: cynA
Funciton: cyanate ABC transporter, substrate binding protein
Locus tag: Synpcc7942_2106
Name: cynB
Funciton: cyanate ABC transporter, permease protein
Locus tag: Synpcc7942_2105
Name: cynD
Funciton: cyanate ABC transporter, ATP-binding protein
Locus tag: Synpcc7942_2104
Name: cynS
Funciton: cyanate hydratase
cynA
cyanate ABC transporter, substrate binding protein
cynB
cyanate ABC transporter, permease protein
cynD
cyanate ABC transporter, ATP-binding protein
cynS
cyanate hydratase

Position: -194
Score: 4.8
Sequence: TGTATCAgcTGTTACA
Locus tag: Synpcc7942_2156
Name: glnA
Funciton: glutamine synthetase, type I
glnA
glutamine synthetase, type I

Position: -103
Score: 4.8
Sequence: TGTAGCAGTAACTACA
Locus tag: Synpcc7942_0321
Name: glnB
Funciton: nitrogen regulatory protein P-II
glnB
nitrogen regulatory protein P-II

Position: -220
Score: 4.9
Sequence: TGTAGCAATTGCTACT
Position: -149
Score: 4.3
Sequence: AGTATCAATGATTACT
Position: -80
Score: 4.4
Sequence: TGTAGTTTCTGTTACC
Locus tag: Synpcc7942_1240
Name: nirA
Funciton: Nitrite reductase, ferredoxin dependent
Locus tag: Synpcc7942_1239
Name: nrtA
Funciton: Nitrate/nitrite ABC transporter, substrate-binding protein
Locus tag: Synpcc7942_1238
Name: nrtB
Funciton: Nitrate/nitrite ABC transporter, permease protein
Locus tag: Synpcc7942_1237
Name: nrtC
Funciton: Nitrate/nitrite ABC transporter, ATP-binding protein 1
Locus tag: Synpcc7942_1236
Name: nrtD
Funciton: Nitrate/nitrite ABC transporter, ATP-binding protein 2
Locus tag: Synpcc7942_1235
Name: narB
Funciton: Nitrate reductase
nirA
Nitrite reductase, ferredoxin dependent
nrtA
Nitrate/nitrite ABC transporter, substrate-binding protein
nrtB
Nitrate/nitrite ABC transporter, permease protein
nrtC
Nitrate/nitrite ABC transporter, ATP-binding protein 1
nrtD
Nitrate/nitrite ABC transporter, ATP-binding protein 2
narB
Nitrate reductase

Position: -157
Score: 4.7
Sequence: AGTAGCAGTTGCTACA
Locus tag: Synpcc7942_0127
Name: ntcA
Funciton: Global nitrogen transcription regulator, Crp family
ntcA
Global nitrogen transcription regulator, Crp family

Position: -153
Score: 4.3
Sequence: AGTAATCATTGATACT
Position: -82
Score: 4.9
Sequence: AGTAGCAATTGCTACA
Locus tag: Synpcc7942_1241
Name: nirB
Funciton: Nitrite reductase related protein
Locus tag: Synpcc7942_1242
Name: ntcB
Funciton: Nitrogen assimilation transcriptional activator, LysR family
nirB
Nitrite reductase related protein
ntcB
Nitrogen assimilation transcriptional activator, LysR family

Position: -27
Score: 4.3
Sequence: TGTATCCGTTGCTACC
Locus tag: Synpcc7942_1845
Name: SYNPCC7002_A2101
Funciton: Conserved hypothetical protein
SYNPCC7002_A2101
Conserved hypothetical protein

Position: -214
Score: 4.8
Sequence: TGTAACAGCTGATACA
Locus tag: Synpcc7942_2158
Name: apcF
Funciton: phycobilisome core component
apcF
phycobilisome core component
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