Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NtcA in Trichodesmium erythraeum IMS101

Properties
Regulator type: Transcription factor
TF locus tag: Tery_2023
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Regulog: NtcA - Cyanobacteria
Statistics of regulated genes:
- Genes 20
- Operons 18
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 228 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -83
Score: 4.9
Sequence: AGTAGCATTTGATACA
Locus tag: Tery_4477
Name: amt1
Funciton: ammonium transporter
amt1
ammonium transporter

Position: -191
Score: 4.1
Sequence: TGTAATTTAGACAACA
Position: -110
Score: 4.6
Sequence: TGTAACTATATATACT
Locus tag: Tery_2891
Name: SYNPCC7002_A0076
Funciton: hypothetical protein
SYNPCC7002_A0076
hypothetical protein

Position: -94
Score: 4.3
Sequence: AGTATTCAAAATTACA
Locus tag: Tery_0672
Name: SYNPCC7002_A2395
Funciton: hypothetical protein
SYNPCC7002_A2395
hypothetical protein

Position: -156
Score: 4.3
Sequence: TGTAGTTATGGCTACC
Locus tag: Tery_3912
Name: SYNPCC7002_A1954
Funciton: putative two-component sensor histidine kinase
SYNPCC7002_A1954
putative two-component sensor histidine kinase

Position: -250
Score: 4
Sequence: CGTAACACCCGATACA
Locus tag: Tery_3834
Name: glnA
Funciton: glutamine synthetase, type I
glnA
glutamine synthetase, type I

Position: -188
Score: 4.3
Sequence: AGTATCAAAAATAACA
Locus tag: Tery_3369
Name: hupS
Funciton: NiFe uptake hydrogenase, small subunit
hupS
NiFe uptake hydrogenase, small subunit

Position: -64
Score: 4.1
Sequence: TGTAGCTACTGATAAA
Locus tag: Tery_3368
Name: hupL
Funciton: NiFe uptake hydrogenase, large subunit
hupL
NiFe uptake hydrogenase, large subunit

Position: -276
Score: 3.8
Sequence: TGTATTTTTATATAGT
Position: -199
Score: 4.1
Sequence: TGTTATATAAGCTACG
Locus tag: Tery_1068
Name: nirA
Funciton: Nitrite reductase, ferredoxin dependent
Locus tag: Tery_1069
Name: nrtP
Funciton: Nitrate/nitrite transporter
Locus tag: Tery_1070
Name: narB
Funciton: Nitrate reductase
nirA
Nitrite reductase, ferredoxin dependent
nrtP
Nitrate/nitrite transporter
narB
Nitrate reductase

Position: -89
Score: 4.7
Sequence: AGTAGCTTCTGTTACA
Locus tag: Tery_0675
Name: nrrA
Funciton: Transcriptional regulator, OmpR family
nrrA
Transcriptional regulator, OmpR family

Position: -27
Score: 4
Sequence: TGTATAAAATAACACA
Locus tag: Tery_4333
Name: ntcB
Funciton: Nitrogen assimilation transcriptional activator, LysR family
ntcB
Nitrogen assimilation transcriptional activator, LysR family

Position: -199
Score: 4
Sequence: TGTAAAATTTTGTACC
Position: -46
Score: 3.7
Sequence: TGTAAAATAATTTATT
Locus tag: Tery_5068
Name: rpoD
Funciton: RNA polymerase sigma 70 factor
rpoD
RNA polymerase sigma 70 factor

Position: -349
Score: 3.8
Sequence: TGTATCTGATGTTAGG
Locus tag: Tery_3029
Name: gifB
Funciton: Glutamine synthetase inactivating factor IF17
gifB
Glutamine synthetase inactivating factor IF17

Position: -40
Score: 3.5
Sequence: TGTATCATTGTCAATA
Locus tag: Tery_1958
Name: fur
Funciton: Ferric uptake regulator, Fur family
fur
Ferric uptake regulator, Fur family

Position: -293
Score: 3.4
Sequence: GATAACTATTACTACG
Locus tag: Tery_4410
Name: rbcL
Funciton: RuBisCO large subunit (EC 4.1.1.39)
rbcL
RuBisCO large subunit (EC 4.1.1.39)

Position: -134
Score: 3.6
Sequence: AGTAATTGATCATACT
Locus tag: Tery_1667
Name: isiA
Funciton: Iron-stress chlorophyll-binding protein
isiA
Iron-stress chlorophyll-binding protein

Position: -228
Score: 4.2
Sequence: TGTATCCTAGGCAACA
Locus tag: Tery_0466
Name: gltS
Funciton: Glutamate synthase (NADPH dependent) large chain (EC 1.4.1.13)
gltS
Glutamate synthase (NADPH dependent) large chain (EC 1.4.1.13)

Position: -390
Score: 3.8
Sequence: AGTTACAAAAAAAACA
Locus tag: Tery_0130
Name: urtA
Funciton: Urea ABC transporter, substrate-binding protein
urtA
Urea ABC transporter, substrate-binding protein

Position: -208
Score: 3.9
Sequence: TGTAGTCGTAGATATA
Position: -120
Score: 4.7
Sequence: TGTAACTAATTATACT
Locus tag: Tery_4747
Name: gor
Funciton: glutathione reductase
gor
glutathione reductase
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