Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NtcA in Nostoc sp. PCC 7120

Properties
Regulator type: Transcription factor
TF locus tag: alr4392
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Regulog: NtcA - Cyanobacteria
Statistics of regulated genes:
- Genes 37
- Operons 28
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 228 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -116
Score: 4.3
Sequence: AGTATCAAAAATAACA
Locus tag: all1951
Name: urtA
Funciton: Urea ABC transporter, substrate-binding protein
Locus tag: all1950
Name: urtB
Funciton: Urea ABC transporter, permease protein 1
Locus tag: all1949
Name: urtC
Funciton: Urea ABC transporter, permease protein 2
Locus tag: all1948
Name: urtD
Funciton: Urea ABC transporter, ATP-binding protein 1
Locus tag: all1947
Name: urtE
Funciton: Urea ABC transporter, ATP-binding protein 2
urtA
Urea ABC transporter, substrate-binding protein
urtB
Urea ABC transporter, permease protein 1
urtC
Urea ABC transporter, permease protein 2
urtD
Urea ABC transporter, ATP-binding protein 1
urtE
Urea ABC transporter, ATP-binding protein 2

Position: -32
Score: 3.6
Sequence: AGTAAAAAGAGTGACA
Locus tag: alr1524
Name: rbcL
Funciton: RuBisCO large subunit (EC 4.1.1.39)
Locus tag: alr1525
Name: rbcX
Funciton: Predicted RuBisCo chaperone
Locus tag: alr1526
Name: rbcS
Funciton: RuBisCO small subunit (EC 4.1.1.39)
rbcL
RuBisCO large subunit (EC 4.1.1.39)
rbcX
Predicted RuBisCo chaperone
rbcS
RuBisCO small subunit (EC 4.1.1.39)

Position: -48
Score: 4.1
Sequence: AATAACAACTGTTACA
Locus tag: all4968
Name: gor
Funciton: glutathione reductase
gor
glutathione reductase

Position: -50
Score: 4.7
Sequence: TGTAACTAAGTATACA
Locus tag: alr0992
Name: amt1
Funciton: ammonium transporter
amt1
ammonium transporter

Position: -250
Score: 4.7
Sequence: TGTATTAACTAATACA
Locus tag: alr0990
Name: amt1
Funciton: ammonium transporter
amt1
ammonium transporter

Position: -107
Score: 3.7
Sequence: CGTATAGCAAAATACA
Locus tag: asr0064
Name: SYNPCC7002_A0076
Funciton: hypothetical protein
SYNPCC7002_A0076
hypothetical protein

Position: -64
Score: 3.9
Sequence: GGTAGTCGGAGTTACA
Locus tag: alr4308
Name: SYNPCC7002_A2395
Funciton: hypothetical protein
SYNPCC7002_A2395
hypothetical protein

Position: -250
Score: 4.6
Sequence: TGTAGTGATAGCTACA
Locus tag: alr3982
Name: SYNPCC7002_A1954
Funciton: putative two-component sensor histidine kinase
SYNPCC7002_A1954
putative two-component sensor histidine kinase

Position: -78
Score: 4.7
Sequence: CGTAGCATAAGATACA
Locus tag: asl2329
Name: gifA
Funciton: glutamine synthetase inactivating factor IF
gifA
glutamine synthetase inactivating factor IF

Position: -142
Score: 4.8
Sequence: TGTAACAAAGACTACA
Locus tag: alr2328
Name: glnA
Funciton: glutamine synthetase, type I
glnA
glutamine synthetase, type I

Position: -214
Score: 3.8
Sequence: AGTTACACAGACTACA
Locus tag: all2319
Name: glnB
Funciton: nitrogen regulatory protein P-II
glnB
nitrogen regulatory protein P-II

Position: -146
Score: 4.7
Sequence: TGTAGCTTAAATTACT
Locus tag: all1127
Name: ndh
Funciton: NADH dehydrogenase, type II
ndh
NADH dehydrogenase, type II

Position: -75
Score: 4.5
Sequence: AGTAACAAAGACTACA
Locus tag: all4312
Name: nrrA
Funciton: Transcriptional regulator, OmpR family
nrrA
Transcriptional regulator, OmpR family

Position: -151
Score: 3.7
Sequence: GGTATCATTATGAACA
Position: -111
Score: 3.7
Sequence: AGTATAGGAAAGTACA
Locus tag: alr4392
Name: ntcA
Funciton: Global nitrogen transcription regulator, Crp family
ntcA
Global nitrogen transcription regulator, Crp family

Position: -80
Score: 4.5
Sequence: TGTAACAAAATCTACC
Position: -21
Score: 4.7
Sequence: TGTAATTAAGGCTACA
Locus tag: all0602
Name: ntcB
Funciton: Nitrogen assimilation transcriptional activator, LysR family
ntcB
Nitrogen assimilation transcriptional activator, LysR family

Position: -52
Score: 4.3
Sequence: CGTAGTGTATGTTACA
Locus tag: all1327
Name: SYNPCC7002_A0264
Funciton: Conserved hypothetical protein
SYNPCC7002_A0264
Conserved hypothetical protein

Position: -291
Score: 3.5
Sequence: AGAAGTAGAAGCTACT
Locus tag: alr2514
Name: coxB
Funciton: Cytochrome c oxidase subunit 2 (EC 1.9.3.1)
Locus tag: alr2515
Name: coxA
Funciton: Cytochrome c oxidase subunit 1 (EC 1.9.3.1)
Locus tag: alr2516
Name: coxC
Funciton: Cytochrome c oxidase subunit 3 (EC 1.9.3.1)
coxB
Cytochrome c oxidase subunit 2 (EC 1.9.3.1)
coxA
Cytochrome c oxidase subunit 1 (EC 1.9.3.1)
coxC
Cytochrome c oxidase subunit 3 (EC 1.9.3.1)

Position: -218
Score: 4.1
Sequence: TGTAGCTTGAGATTCA
Locus tag: all1691
Name: fur
Funciton: Ferric uptake regulator, Fur family
fur
Ferric uptake regulator, Fur family

Position: -91
Score: 3.6
Sequence: TGTGAATATAGAAACA
Locus tag: alr1690
Name: alr1690
Funciton: Peptidoglycan binding domain-containing protein
alr1690
Peptidoglycan binding domain-containing protein

Position: -37
Score: 3.7
Sequence: AGTATTTCTGGCAACA
Locus tag: all4001
Name: isiA
Funciton: Iron-stress chlorophyll-binding protein
isiA
Iron-stress chlorophyll-binding protein

Position: -161
Score: 3.4
Sequence: TGTTACAAAAATTAGG
Locus tag: all1258
Name: psbZ
Funciton: Photosystem II reaction center protein Z
psbZ
Photosystem II reaction center protein Z

Position: -265
Score: 3.5
Sequence: TGGAAAAATTAAAACA
Locus tag: alr4344
Name: gltS
Funciton: Glutamate synthase (NADPH dependent) large chain (EC 1.4.1.13)
gltS
Glutamate synthase (NADPH dependent) large chain (EC 1.4.1.13)

Position: -281
Score: 3.2
Sequence: TGAATTTGATGTAACC
Locus tag: alr1911
Name: nifJ
Funciton: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
nifJ
Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)

Position: -260
Score: 4
Sequence: TGTCTTATAAAATACA
Locus tag: alr4156
Name: ndhF
Funciton: NAD(P)H dehydrogenase subunit (EC 1.6.99.5)
Locus tag: alr4157
Name: ndhD
Funciton: NAD(P)H-quinone oxidoreductase (EC 1.6.5.-)
ndhF
NAD(P)H dehydrogenase subunit (EC 1.6.99.5)
ndhD
NAD(P)H-quinone oxidoreductase (EC 1.6.5.-)

Position: -279
Score: 3.6
Sequence: GGTATTTTTTCCTACT
Locus tag: asr3935
Name: hanA
Funciton: DNA binding protein HU
hanA
DNA binding protein HU

Position: 17
Score: 3.7
Sequence: AGTTACAGATTCTACT
Locus tag: alr0052
Name: trxA
Funciton: Thioredoxin-1
trxA
Thioredoxin-1

Position: -233
Score: 4.8
Sequence: TGTAGTCTTTGTTACA
Locus tag: all2327
Name: apcF
Funciton: phycobilisome core component
apcF
phycobilisome core component

Position: -6
Score: 3.4
Sequence: TGAAATATGTACAACA
Locus tag: alr1827
Name: icd
Funciton: Isocitrate dehydrogenase (NADP+)
icd
Isocitrate dehydrogenase (NADP+)
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