Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NtcA in Cyanothece sp. PCC 7425

Properties
Regulator type: Transcription factor
TF locus tag: Cyan7425_0755
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Regulog: NtcA - Cyanobacteria
Statistics of regulated genes:
- Genes 24
- Operons 15
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 228 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -228
Score: 4.4
Sequence: TGTATAACGTGATACA
Locus tag: Cyan7425_0782
Name: amt1
Funciton: ammonium transporter
amt1
ammonium transporter

Position: -128
Score: 4.3
Sequence: TGTAACATTTGTTATT
Position: -71
Score: 4.1
Sequence: AGTATTGGTGGATACA
Locus tag: Cyan7425_0729
Name: SYNPCC7002_A0076
Funciton: hypothetical protein
SYNPCC7002_A0076
hypothetical protein

Position: -38
Score: 3.7
Sequence: AGTAGTTTAATAAACT
Locus tag: Cyan7425_0833
Name: SYNPCC7002_A2395
Funciton: hypothetical protein
SYNPCC7002_A2395
hypothetical protein

Position: -33
Score: 5.2
Sequence: TGTATCATAAGCTACA
Locus tag: Cyan7425_0732
Name: cce_3797
Funciton: conserved hypothetical protein
cce_3797
conserved hypothetical protein

Position: -221
Score: 4.9
Sequence: TGTAACTCATGATACA
Locus tag: Cyan7425_1839
Name: glnA
Funciton: glutamine synthetase, type I
glnA
glutamine synthetase, type I

Position: -151
Score: 4.4
Sequence: AGTAGCTCGTGATACA
Locus tag: Cyan7425_4042
Name: Cyan7425_4042
Funciton: hypothetical protein
Locus tag: Cyan7425_4041
Name: glnN
Funciton: glutamine synthetase type III
Cyan7425_4042
hypothetical protein
glnN
glutamine synthetase type III

Position: -123
Score: 4.5
Sequence: TGTAACTTAATATACC
Locus tag: Cyan7425_4573
Name: nirA
Funciton: Nitrite reductase, ferredoxin dependent
Locus tag: Cyan7425_4572
Name: nrtA
Funciton: Nitrate/nitrite ABC transporter, substrate-binding protein
Locus tag: Cyan7425_4571
Name: nrtB
Funciton: Nitrate/nitrite ABC transporter, permease protein
Locus tag: Cyan7425_4570
Name: nrtC
Funciton: Nitrate/nitrite ABC transporter, ATP-binding protein 1
Locus tag: Cyan7425_4569
Name: nrtD
Funciton: Nitrate/nitrite ABC transporter, ATP-binding protein 2
nirA
Nitrite reductase, ferredoxin dependent
nrtA
Nitrate/nitrite ABC transporter, substrate-binding protein
nrtB
Nitrate/nitrite ABC transporter, permease protein
nrtC
Nitrate/nitrite ABC transporter, ATP-binding protein 1
nrtD
Nitrate/nitrite ABC transporter, ATP-binding protein 2

Position: -82
Score: 4.1
Sequence: AGTAGCTAGAGTTACG
Locus tag: Cyan7425_0851
Name: nrrA
Funciton: Transcriptional regulator, OmpR family
nrrA
Transcriptional regulator, OmpR family

Position: -173
Score: 4.8
Sequence: TGTATCCGATGATACA
Locus tag: Cyan7425_0755
Name: ntcA
Funciton: Global nitrogen transcription regulator, Crp family
ntcA
Global nitrogen transcription regulator, Crp family

Position: -78
Score: 4.6
Sequence: TGTATCACTATCTACA
Locus tag: Cyan7425_1599
Name: ntcB
Funciton: Nitrogen assimilation transcriptional activator, LysR family
ntcB
Nitrogen assimilation transcriptional activator, LysR family

Position: -33
Score: 5.2
Sequence: TGTATCATAAGCTACA
Locus tag: Cyan7425_0732
Name: SYNPCC7002_A2101
Funciton: Conserved hypothetical protein
SYNPCC7002_A2101
Conserved hypothetical protein

Position: -120
Score: 3.1
Sequence: TCTAACGTATTCTCCA
Locus tag: Cyan7425_4369
Name: nifJ
Funciton: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
nifJ
Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)

Position: -148
Score: 3.7
Sequence: TGTATAATAGATCACA
Locus tag: Cyan7425_2260
Name: urtA
Funciton: Urea ABC transporter, substrate-binding protein
Locus tag: Cyan7425_2259
Name: urtB
Funciton: Urea ABC transporter, permease protein 1
Locus tag: Cyan7425_2258
Name: urtC
Funciton: Urea ABC transporter, permease protein 2
Locus tag: Cyan7425_2257
Name: urtD
Funciton: Urea ABC transporter, ATP-binding protein 1
Locus tag: Cyan7425_2256
Name: urtE
Funciton: Urea ABC transporter, ATP-binding protein 2
urtA
Urea ABC transporter, substrate-binding protein
urtB
Urea ABC transporter, permease protein 1
urtC
Urea ABC transporter, permease protein 2
urtD
Urea ABC transporter, ATP-binding protein 1
urtE
Urea ABC transporter, ATP-binding protein 2

Position: -158
Score: 4.7
Sequence: GGTATCATATAATACA
Locus tag: Cyan7425_1393
Name: gifB
Funciton: Glutamine synthetase inactivating factor IF17
gifB
Glutamine synthetase inactivating factor IF17

Position: -281
Score: 4.9
Sequence: TGTATCATGAGTTACA
Locus tag: Cyan7425_1838
Name: apcF
Funciton: phycobilisome core component
apcF
phycobilisome core component
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