Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NtcA in Cyanothece sp. PCC 8801

Properties
Regulator type: Transcription factor
TF locus tag: PCC8801_2058
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Regulog: NtcA - Cyanobacteria
Statistics of regulated genes:
- Genes 32
- Operons 22
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 228 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -264
Score: 5
Sequence: TGTATTTTTTGATACA
Position: -229
Score: 4.1
Sequence: AGTAATAAAAAAAACA
Locus tag: PCC8801_1229
Name: amt1
Funciton: ammonium transporter
amt1
ammonium transporter

Position: -95
Score: 4.6
Sequence: TGTATTGGTTGTTACA
Locus tag: PCC8801_3101
Name: SYNPCC7002_A0076
Funciton: hypothetical protein
SYNPCC7002_A0076
hypothetical protein

Position: -53
Score: 4.8
Sequence: TGTAATATTAATTACA
Locus tag: PCC8801_2066
Name: SYNPCC7002_A2395
Funciton: hypothetical protein
SYNPCC7002_A2395
hypothetical protein

Position: -198
Score: 4.8
Sequence: TGTAATCATAGTTACA
Locus tag: PCC8801_3053
Name: SYNPCC7002_A1954
Funciton: putative two-component sensor histidine kinase
SYNPCC7002_A1954
putative two-component sensor histidine kinase

Position: -165
Score: 5.1
Sequence: TGTAACTTTAGATACA
Locus tag: PCC8801_3848
Name: cce_3797
Funciton: conserved hypothetical protein
cce_3797
conserved hypothetical protein

Position: -94
Score: 4.9
Sequence: TGTATAAATTGCTACA
Locus tag: PCC8801_2371
Name: gifA
Funciton: glutamine synthetase inactivating factor IF
gifA
glutamine synthetase inactivating factor IF

Position: -92
Score: 4
Sequence: CGTATCATGGTATACA
Locus tag: PCC8801_0808
Name: glnA
Funciton: glutamine synthetase, type I
glnA
glutamine synthetase, type I

Position: -127
Score: 4.3
Sequence: TGTAACAACAATAACA
Locus tag: PCC8801_3212
Name: hupS
Funciton: NiFe uptake hydrogenase, small subunit
Locus tag: PCC8801_3213
Name: hupL
Funciton: NiFe uptake hydrogenase, large subunit
hupS
NiFe uptake hydrogenase, small subunit
hupL
NiFe uptake hydrogenase, large subunit

Position: -117
Score: 4.6
Sequence: TGTAACCATAGCTACT
Position: -92
Score: 3.8
Sequence: CGTAATTGGTTTTACA
Locus tag: PCC8801_3485
Name: ndh
Funciton: NADH dehydrogenase, type II
ndh
NADH dehydrogenase, type II

Position: -184
Score: 4.6
Sequence: TGTAGCAAATAATACG
Position: -106
Score: 3.9
Sequence: AGTATTTATAGACACA
Locus tag: PCC8801_4396
Name: nrtA
Funciton: Nitrate/nitrite ABC transporter, substrate-binding protein
Locus tag: PCC8801_4395
Name: nrtB
Funciton: Nitrate/nitrite ABC transporter, permease protein
Locus tag: PCC8801_4394
Name: nrtC
Funciton: Nitrate/nitrite ABC transporter, ATP-binding protein 1
Locus tag: PCC8801_4393
Name: nrtD
Funciton: Nitrate/nitrite ABC transporter, ATP-binding protein 2
nrtA
Nitrate/nitrite ABC transporter, substrate-binding protein
nrtB
Nitrate/nitrite ABC transporter, permease protein
nrtC
Nitrate/nitrite ABC transporter, ATP-binding protein 1
nrtD
Nitrate/nitrite ABC transporter, ATP-binding protein 2

Position: -75
Score: 4.6
Sequence: TGTTACAATTAATACA
Locus tag: PCC8801_2468
Name: nirA
Funciton: Nitrite reductase, ferredoxin dependent
Locus tag: PCC8801_2467
Name: nrtP
Funciton: Nitrate/nitrite transporter
nirA
Nitrite reductase, ferredoxin dependent
nrtP
Nitrate/nitrite transporter

Position: -165
Score: 4.4
Sequence: TGTATtAccaaATACA
Locus tag: PCC8801_2463
Name: narB
Funciton: Nitrate reductase
narB
Nitrate reductase

Position: -76
Score: 4.5
Sequence: CGTAGCAGATGTTACA
Locus tag: PCC8801_3375
Name: nrrA
Funciton: Transcriptional regulator, OmpR family
nrrA
Transcriptional regulator, OmpR family

Position: -80
Score: 4.7
Sequence: TGTATCAAATTCTACT
Locus tag: PCC8801_2329
Name: ntcB
Funciton: Nitrogen assimilation transcriptional activator, LysR family
ntcB
Nitrogen assimilation transcriptional activator, LysR family

Position: -165
Score: 5.1
Sequence: TGTAACTTTAGATACA
Locus tag: PCC8801_3848
Name: SYNPCC7002_A2101
Funciton: Conserved hypothetical protein
SYNPCC7002_A2101
Conserved hypothetical protein

Position: -59
Score: 4.4
Sequence: AGTAGTTATTGCTACT
Locus tag: PCC8801_3216
Name: psbA3
Funciton: Photosystem II D1 protein
psbA3
Photosystem II D1 protein

Position: -257
Score: 4.4
Sequence: TGTAATCGAGGCTACA
Locus tag: PCC8801_0154
Name: rpoD
Funciton: RNA polymerase sigma 70 factor
rpoD
RNA polymerase sigma 70 factor

Position: -380
Score: 3.4
Sequence: TGTTTATGCTAAAACA
Locus tag: PCC8801_0870
Name: fur
Funciton: Ferric uptake regulator, Fur family
fur
Ferric uptake regulator, Fur family

Position: -148
Score: 3.8
Sequence: TTTATTATTTGTTACC
Locus tag: PCC8801_0567
Name: coxB
Funciton: Cytochrome c oxidase subunit 2 (EC 1.9.3.1)
Locus tag: PCC8801_0568
Name: coxA
Funciton: Cytochrome c oxidase subunit 1 (EC 1.9.3.1)
Locus tag: PCC8801_0569
Name: coxC
Funciton: Cytochrome c oxidase subunit 3 (EC 1.9.3.1)
coxB
Cytochrome c oxidase subunit 2 (EC 1.9.3.1)
coxA
Cytochrome c oxidase subunit 1 (EC 1.9.3.1)
coxC
Cytochrome c oxidase subunit 3 (EC 1.9.3.1)

Position: -265
Score: 3.5
Sequence: AGTAACCATAATTATT
Locus tag: PCC8801_3918
Name: nifJ
Funciton: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
nifJ
Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)

Position: -238
Score: 3.6
Sequence: CGTATTATGAGTTAGA
Locus tag: PCC8801_4247
Name: ndhF
Funciton: NAD(P)H dehydrogenase subunit (EC 1.6.99.5)
Locus tag: PCC8801_4248
Name: ecaB
Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: PCC8801_4249
Name: ndhD
Funciton: NAD(P)H-quinone oxidoreductase (EC 1.6.5.-)
Locus tag: PCC8801_4250
Name: cupA
Funciton: Carbon dioxide hydration protein
ndhF
NAD(P)H dehydrogenase subunit (EC 1.6.99.5)
ecaB
Carbonic anhydrase (EC 4.2.1.1)
ndhD
NAD(P)H-quinone oxidoreductase (EC 1.6.5.-)
cupA
Carbon dioxide hydration protein

Position: -251
Score: 4
Sequence: TGTATACCATGATACG
Locus tag: PCC8801_0807
Name: apcF
Funciton: phycobilisome core component
apcF
phycobilisome core component
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