Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NtcA in Cyanothece sp. ATCC 51142

Properties
Regulator type: Transcription factor
TF locus tag: cce_0461
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Regulog: NtcA - Cyanobacteria
Statistics of regulated genes:
- Genes 23
- Operons 21
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 228 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -177
Score: 3.8
Sequence: TGTGATAAGAAATACA
Locus tag: cce_1944
Name: apcF
Funciton: phycobilisome core component
apcF
phycobilisome core component

Position: -152
Score: 3.5
Sequence: TGTtAaggtTGTaACA
Locus tag: cce_3261
Name: amt1
Funciton: ammonium transporter
amt1
ammonium transporter

Position: -137
Score: 4
Sequence: TGTAAACTATGATATA
Position: -93
Score: 4.8
Sequence: TGTAGTCTTTGTTACA
Locus tag: cce_0537
Name: SYNPCC7002_A0076
Funciton: hypothetical protein
SYNPCC7002_A0076
hypothetical protein

Position: -172
Score: 4.7
Sequence: TGTTACAATAGCTACA
Locus tag: cce_4355
Name: SYNPCC7002_A0077
Funciton: hypothetical protein
SYNPCC7002_A0077
hypothetical protein

Position: -148
Score: 4
Sequence: TGTAACATATGATAAC
Position: -87
Score: 4.6
Sequence: TGTAATATTGATTACA
Locus tag: cce_2729
Name: SYNPCC7002_A2395
Funciton: hypothetical protein
SYNPCC7002_A2395
hypothetical protein

Position: -210
Score: 4.7
Sequence: TGTAGTCATAGTTACA
Position: -46
Score: 4
Sequence: TTTATTTTCTGTTACA
Locus tag: cce_3327
Name: SYNPCC7002_A1954
Funciton: putative two-component sensor histidine kinase
SYNPCC7002_A1954
putative two-component sensor histidine kinase

Position: -70
Score: 4.9
Sequence: TGTAGCTTAATATACA
Locus tag: cce_3797
Name: cce_3797
Funciton: conserved hypothetical protein
cce_3797
conserved hypothetical protein

Position: -95
Score: 5.2
Sequence: TGTAGCAAATGTTACA
Locus tag: cce_0259
Name: gifA
Funciton: glutamine synthetase inactivating factor IF
gifA
glutamine synthetase inactivating factor IF

Position: -89
Score: 4.5
Sequence: AGTATCCAATTATACA
Position: -30
Score: 4
Sequence: TGTATATATTGAAACC
Locus tag: cce_4432
Name: glnA
Funciton: glutamine synthetase, type I
glnA
glutamine synthetase, type I

Position: -204
Score: 4.8
Sequence: TGTAAAATTTAATACA
Position: -159
Score: 3.8
Sequence: GGTAATAATTAATAGA
Locus tag: cce_1063
Name: hupS
Funciton: NiFe uptake hydrogenase, small subunit
Locus tag: cce_1064
Name: hupL
Funciton: NiFe uptake hydrogenase, large subunit
hupS
NiFe uptake hydrogenase, small subunit
hupL
NiFe uptake hydrogenase, large subunit

Position: -47
Score: 4.7
Sequence: TGTAACTGTAGTTACT
Locus tag: cce_0624
Name: ndh
Funciton: NADH dehydrogenase, type II
ndh
NADH dehydrogenase, type II

Position: -76
Score: 4.7
Sequence: TGTTACATTAGCTACA
Locus tag: cce_1223
Name: nirA
Funciton: Nitrite reductase, ferredoxin dependent
Locus tag: cce_1222
Name: nrtP
Funciton: Nitrate/nitrite transporter
nirA
Nitrite reductase, ferredoxin dependent
nrtP
Nitrate/nitrite transporter

Position: -76
Score: 4.3
Sequence: CGTAGCCGATGTTACA
Locus tag: cce_1808
Name: nrrA
Funciton: Transcriptional regulator, OmpR family
nrrA
Transcriptional regulator, OmpR family

Position: -73
Score: 4.2
Sequence: AGTATCAATTTCTACG
Locus tag: cce_0198
Name: ntcB
Funciton: Nitrogen assimilation transcriptional activator, LysR family
ntcB
Nitrogen assimilation transcriptional activator, LysR family

Position: -70
Score: 4.9
Sequence: TGTAGCTTAATATACA
Locus tag: cce_3797
Name: SYNPCC7002_A2101
Funciton: Conserved hypothetical protein
SYNPCC7002_A2101
Conserved hypothetical protein

Position: -58
Score: 4.4
Sequence: GGTAATCATTGATACA
Locus tag: cce_0267
Name: psbA3
Funciton: Photosystem II D1 protein
psbA3
Photosystem II D1 protein

Position: -232
Score: 4.3
Sequence: AGTAATCAAGGCTACA
Locus tag: cce_0875
Name: rpoD
Funciton: RNA polymerase sigma 70 factor
rpoD
RNA polymerase sigma 70 factor

Position: -144
Score: 5.2
Sequence: TGTAACAATAGATACA
Locus tag: cce_2638
Name: gifB
Funciton: Glutamine synthetase inactivating factor IF17
gifB
Glutamine synthetase inactivating factor IF17

Position: -332
Score: 3.7
Sequence: AATAGCTATAATTACT
Locus tag: cce_2390
Name: trxQ
Funciton: Thioredoxin
trxQ
Thioredoxin

Position: -52
Score: 3.8
Sequence: TGCAACAAAAATTACC
Locus tag: cce_0953
Name: nifJ
Funciton: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
nifJ
Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)

Position: -20
Score: 4.2
Sequence: TGTAACTGTATTAACA
Locus tag: cce_3633
Name: psbZ
Funciton: Photosystem II reaction center protein Z
psbZ
Photosystem II reaction center protein Z
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD