Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NtcA in Synechocystis sp. PCC 6803

Properties
Regulator type: Transcription factor
TF locus tag: sll1423
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Regulog: NtcA - Cyanobacteria
Statistics of regulated genes:
- Genes 23
- Operons 18
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 228 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -228
Score: 4.3
Sequence: TGTAATTTAAAAAACA
Locus tag: slr0009
Name: rbcL
Funciton: RuBisCO large subunit (EC 4.1.1.39)
rbcL
RuBisCO large subunit (EC 4.1.1.39)

Position: -189
Score: 4
Sequence: AGTAGTAAATCATACA
Position: -18
Score: 4.4
Sequence: TGTAGATTAAAGTACA
Locus tag: sll0108
Name: amt1
Funciton: ammonium transporter
amt1
ammonium transporter

Position: -78
Score: 4.5
Sequence: TGTAATCGATAATACA
Locus tag: ssr1562
Name: SYNPCC7002_A0076
Funciton: hypothetical protein
SYNPCC7002_A0076
hypothetical protein

Position: -214
Score: 4.7
Sequence: TGTAATGATAGTTACA
Locus tag: slr1147
Name: SYNPCC7002_A1954
Funciton: putative two-component sensor histidine kinase
SYNPCC7002_A1954
putative two-component sensor histidine kinase

Position: -89
Score: 5
Sequence: TGTATAAAATGTTACA
Locus tag: ssl1911
Name: gifA
Funciton: glutamine synthetase inactivating factor IF
gifA
glutamine synthetase inactivating factor IF

Position: -98
Score: 4.3
Sequence: GGTAGCGAAAAATACA
Locus tag: slr1756
Name: glnA
Funciton: glutamine synthetase, type I
glnA
glutamine synthetase, type I

Position: -184
Score: 3.7
Sequence: GGTACTGATTTTTACA
Locus tag: ssl0707
Name: glnB
Funciton: nitrogen regulatory protein P-II
glnB
nitrogen regulatory protein P-II

Position: -72
Score: 4.1
Sequence: TGTAACAACCATTACC
Locus tag: slr0851
Name: ndh
Funciton: NADH dehydrogenase, type II
ndh
NADH dehydrogenase, type II

Position: -96
Score: 3.9
Sequence: AGTTACAAACTATACA
Locus tag: sll1450
Name: nrtA
Funciton: Nitrate/nitrite ABC transporter, substrate-binding protein
Locus tag: sll1451
Name: nrtB
Funciton: Nitrate/nitrite ABC transporter, permease protein
Locus tag: sll1452
Name: nrtC
Funciton: Nitrate/nitrite ABC transporter, ATP-binding protein 1
Locus tag: sll1453
Name: nrtD
Funciton: Nitrate/nitrite ABC transporter, ATP-binding protein 2
Locus tag: sll1454
Name: narB
Funciton: Nitrate reductase
nrtA
Nitrate/nitrite ABC transporter, substrate-binding protein
nrtB
Nitrate/nitrite ABC transporter, permease protein
nrtC
Nitrate/nitrite ABC transporter, ATP-binding protein 1
nrtD
Nitrate/nitrite ABC transporter, ATP-binding protein 2
narB
Nitrate reductase

Position: -74
Score: 4.7
Sequence: TGTAATTTACGTTACA
Locus tag: slr0898
Name: nirA
Funciton: Nitrite reductase, ferredoxin dependent
nirA
Nitrite reductase, ferredoxin dependent

Position: -75
Score: 4.6
Sequence: GGTAACTGTTGTTACA
Locus tag: sll1330
Name: nrrA
Funciton: Transcriptional regulator, OmpR family
nrrA
Transcriptional regulator, OmpR family

Position: -246
Score: 3.9
Sequence: TGTTATCGAGGCTACA
Locus tag: slr0653
Name: rpoD
Funciton: RNA polymerase sigma 70 factor
rpoD
RNA polymerase sigma 70 factor

Position: -119
Score: 4.2
Sequence: CGTAAAAATGGATACA
Locus tag: sll1515
Name: gifB
Funciton: Glutamine synthetase inactivating factor IF17
gifB
Glutamine synthetase inactivating factor IF17

Position: -181
Score: 3.3
Sequence: AGAATCAACAAAAACA
Locus tag: sll0741
Name: nifJ
Funciton: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
nifJ
Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)

Position: -264
Score: 3.8
Sequence: GGTAGTTTTTGAAACT
Locus tag: sll1712
Name: hanA
Funciton: DNA binding protein HU
hanA
DNA binding protein HU

Position: -252
Score: 4
Sequence: TGTAACAATTTTTAGT
Locus tag: sll1733
Name: ndhD
Funciton: NAD(P)H-quinone oxidoreductase (EC 1.6.5.-)
Locus tag: sll1734
Name: cupA
Funciton: Carbon dioxide hydration protein
ndhD
NAD(P)H-quinone oxidoreductase (EC 1.6.5.-)
cupA
Carbon dioxide hydration protein

Position: -244
Score: 4
Sequence: TGTAACAAATAACACT
Locus tag: sll1732
Name: ndhF
Funciton: NAD(P)H dehydrogenase subunit (EC 1.6.99.5)
ndhF
NAD(P)H dehydrogenase subunit (EC 1.6.99.5)

Position: -211
Score: 4.5
Sequence: GGTATCCTATGCTACA
Locus tag: slr0447
Name: urtA
Funciton: Urea ABC transporter, substrate-binding protein
urtA
Urea ABC transporter, substrate-binding protein
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD