Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of NtcA in Synechococcus sp. PCC 7002

Properties
Regulator type: Transcription factor
TF locus tag: SYNPCC7002_A1675
Regulator family: CRP
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: 2-oxoglutarate
Regulog: NtcA - Cyanobacteria
Statistics of regulated genes:
- Genes 23
- Operons 16
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 228 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -127
Score: 4.1
Sequence: TGTATCAAGTGTCACA
Locus tag: SYNPCC7002_A0398
Name: urtA
Funciton: Urea ABC transporter, substrate-binding protein
Locus tag: SYNPCC7002_A0397
Name: urtB
Funciton: Urea ABC transporter, permease protein 1
Locus tag: SYNPCC7002_A0396
Name: urtC
Funciton: Urea ABC transporter, permease protein 2
Locus tag: SYNPCC7002_A0395
Name: urtD
Funciton: Urea ABC transporter, ATP-binding protein 1
urtA
Urea ABC transporter, substrate-binding protein
urtB
Urea ABC transporter, permease protein 1
urtC
Urea ABC transporter, permease protein 2
urtD
Urea ABC transporter, ATP-binding protein 1

Position: -52
Score: 3.7
Sequence: GGTTACTTCTGCTACC
Locus tag: SYNPCC7002_A2208
Name: amt1
Funciton: ammonium transporter
amt1
ammonium transporter

Position: -97
Score: 4.2
Sequence: AGTATTGAAATATACA
Locus tag: SYNPCC7002_A0076
Name: SYNPCC7002_A0076
Funciton: hypothetical protein
Locus tag: SYNPCC7002_A0077
Name: SYNPCC7002_A0077
Funciton: hypothetical protein
SYNPCC7002_A0076
hypothetical protein
SYNPCC7002_A0077
hypothetical protein

Position: -200
Score: 4.5
Sequence: TGTTACTTAAATTACA
Position: -92
Score: 4.5
Sequence: TGTAGTAGACGTTACA
Locus tag: SYNPCC7002_A2395
Name: SYNPCC7002_A2395
Funciton: hypothetical protein
SYNPCC7002_A2395
hypothetical protein

Position: -243
Score: 4.7
Sequence: TGTAACAGGAGTTACA
Locus tag: SYNPCC7002_A1954
Name: SYNPCC7002_A1954
Funciton: putative two-component sensor histidine kinase
SYNPCC7002_A1954
putative two-component sensor histidine kinase

Position: -237
Score: 4.5
Sequence: CGTATCTTTAATTACA
Locus tag: SYNPCC7002_A0643
Name: cynS
Funciton: cyanate hydratase
cynS
cyanate hydratase

Position: -221
Score: 4.1
Sequence: TGTAATTGATTTAACA
Locus tag: SYNPCC7002_A0860
Name: cynA
Funciton: cyanate ABC transporter, substrate binding protein
Locus tag: SYNPCC7002_A0861
Name: cynB
Funciton: cyanate ABC transporter, permease protein
Locus tag: SYNPCC7002_A0862
Name: cynD
Funciton: cyanate ABC transporter, ATP-binding protein
Locus tag: SYNPCC7002_A0863
Name: cynS
Funciton: cyanate hydratase
cynA
cyanate ABC transporter, substrate binding protein
cynB
cyanate ABC transporter, permease protein
cynD
cyanate ABC transporter, ATP-binding protein
cynS
cyanate hydratase

Position: -96
Score: 5
Sequence: TGTATCAAATTTTACA
Locus tag: SYNPCC7002_A0582
Name: gifA
Funciton: glutamine synthetase inactivating factor IF
gifA
glutamine synthetase inactivating factor IF

Position: -125
Score: 3.5
Sequence: TGTgACccAgacTACA
Locus tag: SYNPCC7002_A1630
Name: glnA
Funciton: glutamine synthetase, type I
glnA
glutamine synthetase, type I

Position: -111
Score: 4
Sequence: CGTAGTTAACACTACA
Locus tag: SYNPCC7002_A1827
Name: nirA
Funciton: Nitrite reductase, ferredoxin dependent
nirA
Nitrite reductase, ferredoxin dependent

Position: -75
Score: 4.1
Sequence: CGTAACCACGGTTACA
Locus tag: SYNPCC7002_A0496
Name: nrrA
Funciton: Transcriptional regulator, OmpR family
nrrA
Transcriptional regulator, OmpR family

Position: -177
Score: 3.9
Sequence: TGAAGCAAAAAGTACA
Locus tag: SYNPCC7002_A1675
Name: ntcA
Funciton: Global nitrogen transcription regulator, Crp family
ntcA
Global nitrogen transcription regulator, Crp family

Position: -87
Score: 3.9
Sequence: TGTAACATccGgaACA
Locus tag: SYNPCC7002_A1632
Name: ntcB
Funciton: Nitrogen assimilation transcriptional activator, LysR family
ntcB
Nitrogen assimilation transcriptional activator, LysR family

Position: 67
Score: 5
Sequence: TGTATCATtaaATACA
Locus tag: SYNPCC7002_A2101
Name: SYNPCC7002_A2101
Funciton: Conserved hypothetical protein
SYNPCC7002_A2101
Conserved hypothetical protein

Position: -29
Score: 5
Sequence: TGTATCAAATACTACA
Locus tag: SYNPCC7002_A0264
Name: SYNPCC7002_A0264
Funciton: Conserved hypothetical protein
SYNPCC7002_A0264
Conserved hypothetical protein

Position: -272
Score: 4.1
Sequence: TTTATCATTTTCTACA
Locus tag: SYNPCC7002_A1443
Name: nifJ
Funciton: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
nifJ
Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
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