Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NikR - Desulfovibrionales

Properties
Regulator type: Transcription factor
Regulator family: NikR
Regulation mode: repressor
Biological process: Nickel homeostasis
Effector: Nickel ion, (Ni2+)
Phylum: Proteobacteria/delta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 16 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Desulfovibrio vulgaris Hildenborough 4 2
Desulfovibrio vulgaris str. Miyazaki F 4 3
Desulfovibrio desulfuricans G20 9 3
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 5 2
Desulfovibrio piger ATCC 29098 5 1
Desulfovibrio salexigens DSM 2638 2 1
Desulfovibrio magneticus RS-1
Lawsonia intracellularis PHE/MN1-00 4 1
Desulfomicrobium baculatum DSM 4028 2 1
Desulfohalobium retbaense DSM 5692
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
hydA2
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
*
Desulfovibrio desulfuricans G20

Site:
position = -122
score = 5.18421
sequence = GTGGTAG-(13)-ATAGCAC

Site:
position = -82
score = 7.40833
sequence = GTATTAC-(13)-GTAACAC

Gene: Dde_2281: Periplasmic [Fe] hydrogenase large subunit (EC 1.12.7.2)
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_1332: Periplasmic [Fe] hydrogenase large subunit (EC 1.12.7.2)
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
Periplasmic [Fe] hydrogenase large subunit (EC 1.12.7.2)
hydB2
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Desulfovibrio desulfuricans G20

Gene: Dde_2280: Periplasmic [Fe] hydrogenase small subunit (EC 1.12.7.2)
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_1333: Periplasmic [Fe] hydrogenase small subunit (EC 1.12.7.2)
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
Periplasmic [Fe] hydrogenase small subunit (EC 1.12.7.2)
 
CRON 2.
nikK
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -83
score = 6.75042
sequence = GTGACAC-(13)-GTGTAAC

Gene: DVU2769: Additional periplasmic component NikK of nickel ECF transporter
*
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -89
score = 6.75042
sequence = GTGACAC-(13)-GTGTAAC

Gene: DvMF_2859: Additional periplasmic component NikK of nickel ECF transporter
*
Desulfovibrio desulfuricans G20

Site:
position = -105
score = 7.30298
sequence = GTGTTAT-(13)-GTAACAC

Gene: Dde_1189: Additional periplasmic component NikK of nickel ECF transporter
*
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Site:
position = -93
score = 5.35245
sequence = TTGCTAC-(13)-GTGTAAC

Gene: Ddes_1470: Additional periplasmic component NikK of nickel ECF transporter
*
Desulfovibrio piger ATCC 29098

Site:
position = -134
score = 5.18188
sequence = GTGTAAA-(13)-CTAACGC

Gene: DESPIG_00816: Additional periplasmic component NikK of nickel ECF transporter
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_1883: Additional periplasmic component NikK of nickel ECF transporter
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_3139: Additional periplasmic component NikK of nickel ECF transporter
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_0755: Additional periplasmic component NikK of nickel ECF transporter
Additional periplasmic component NikK of nickel ECF transporter
nikM
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -121
score = 7.30298
sequence = GTGTTAT-(13)-GTAACAC

Gene: DVU1058: Substrate-specific component NikM of nickel ECF transporter
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_3139: Substrate-specific component NikM of nickel ECF transporter
 
Desulfovibrio desulfuricans G20

Gene: Dde_1190: Substrate-specific component NikM of nickel ECF transporter
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_1471: Substrate-specific component NikM of nickel ECF transporter
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_00817: Substrate-specific component NikM of nickel ECF transporter
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_0774: Substrate-specific component NikM of nickel ECF transporter
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00

Gene: LI0863: Substrate-specific component NikM of nickel ECF transporter
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_3138: Substrate-specific component NikM of nickel ECF transporter
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_0756: Substrate-specific component NikM of nickel ECF transporter
Substrate-specific component NikM of nickel ECF transporter
nikL
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Desulfovibrio desulfuricans G20

Gene: Dde_1191: Additional component NikL of nickel ECF transporter
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_1472: Additional component NikL of nickel ECF transporter
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_00818: Additional component NikL of nickel ECF transporter
*
Desulfovibrio salexigens DSM 2638

Site:
position = -71
score = 6.73655
sequence = GTACCAC-(13)-GTGACAC

Gene: Desal_1884: Additional component NikL of nickel ECF transporter
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_3137: Additional component NikL of nickel ECF transporter
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_0757: Additional component NikL of nickel ECF transporter
Additional component NikL of nickel ECF transporter
nikQ
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU1057: Transmembrane component NikQ of energizing module of nickel ECF transporter
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_3138: Transmembrane component NikQ of energizing module of nickel ECF transporter
 
Desulfovibrio desulfuricans G20

Gene: Dde_1192: Transmembrane component NikQ of energizing module of nickel ECF transporter
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_1473: Transmembrane component NikQ of energizing module of nickel ECF transporter
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_00819: Transmembrane component NikQ of energizing module of nickel ECF transporter
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_3207: Transmembrane component NikQ of energizing module of nickel ECF transporter
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00

Gene: LI0862: Transmembrane component NikQ of energizing module of nickel ECF transporter
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_3136: Transmembrane component NikQ of energizing module of nickel ECF transporter
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_0162: Transmembrane component NikQ of energizing module of nickel ECF transporter
Transmembrane component NikQ of energizing module of nickel ECF transporter
nikO
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU1056: ATPase component NikO of energizing module of nickel ECF transporter
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_3137: ATPase component NikO of energizing module of nickel ECF transporter
 
Desulfovibrio desulfuricans G20

Gene: Dde_1193: ATPase component NikO of energizing module of nickel ECF transporter
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_1474: ATPase component NikO of energizing module of nickel ECF transporter
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_00820: ATPase component NikO of energizing module of nickel ECF transporter
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_3208: ATPase component NikO of energizing module of nickel ECF transporter
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00

Gene: LI0861: ATPase component NikO of energizing module of nickel ECF transporter
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_3135: ATPase component NikO of energizing module of nickel ECF transporter
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_0161: ATPase component NikO of energizing module of nickel ECF transporter
ATPase component NikO of energizing module of nickel ECF transporter
LI0864
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio magneticus RS-1
*
Lawsonia intracellularis PHE/MN1-00

Site:
position = -98
score = 6.53909
sequence = GTATCAT-(13)-GTATTAC

Site:
position = -68
score = 5.53091
sequence = ATGATAT-(13)-GTTACAC

Gene: LI0864: hypothetical protein
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
hypothetical protein
 
CRON 3.
nikA
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_2402: Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3)
 
Desulfovibrio desulfuricans G20
*
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Site:
position = -85
score = 6.97052
sequence = GTGTCAC-(13)-TTGACAC

Gene: Ddes_1032: Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3)
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio magneticus RS-1

Gene: DMR_12040: Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3)
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3)
nikB
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_2401: Nickel transport system permease protein NikB (TC 3.A.1.5.3)
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_1031: Nickel transport system permease protein NikB (TC 3.A.1.5.3)
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio magneticus RS-1

Gene: DMR_12030: Nickel transport system permease protein NikB (TC 3.A.1.5.3)
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
Nickel transport system permease protein NikB (TC 3.A.1.5.3)
nikC
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_2400: Nickel transport system permease protein NikC (TC 3.A.1.5.3)
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_1030: Nickel transport system permease protein NikC (TC 3.A.1.5.3)
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio magneticus RS-1

Gene: DMR_12020: Nickel transport system permease protein NikC (TC 3.A.1.5.3)
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
Nickel transport system permease protein NikC (TC 3.A.1.5.3)
nikD
 
Desulfovibrio vulgaris Hildenborough
*2
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_2399: Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3)

Site:
position = -265
score = 5.39099
sequence = GCAACAC-(13)-GTGACCC

Gene: DvMF_2398: Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3)
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_1029: Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3)
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 2
Desulfovibrio magneticus RS-1

Gene: DMR_12010: Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3)

Gene: DMR_12000: Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3)
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3)
 
CRON 4.
hysB
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU1917: [Ni/Fe] hydrogenase, group 1, small subunit
*
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -244
score = 6.80137
sequence = GTAACAC-(13)-ATAACAC

Gene: DvMF_0274: [Ni/Fe] hydrogenase, group 1, small subunit
*
Desulfovibrio desulfuricans G20

Site:
position = -65
score = 5.66554
sequence = GTCTCAG-(13)-GTAAAAC

Gene: Dde_2134: [Ni/Fe] hydrogenase, group 1, small subunit
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_00297: [Ni/Fe] hydrogenase, group 1, small subunit
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_2050: [Ni/Fe] hydrogenase, group 1, small subunit
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
*
Desulfomicrobium baculatum DSM 4028

Site:
position = -216
score = 6.25979
sequence = GTGTTAT-(13)-GTAACAT

Gene: Dbac_1970: [Ni/Fe] hydrogenase, group 1, small subunit
 
Desulfohalobium retbaense DSM 5692
[Ni/Fe] hydrogenase, group 1, small subunit
hysA
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU1918: [Ni/Fe] hydrogenase, group 1, large subunit; selenocysteine-containing
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_0273: [Ni/Fe] hydrogenase, group 1, large subunit; selenocysteine-containing
 
Desulfovibrio desulfuricans G20

Gene: Dde_2135: [Ni/Fe] hydrogenase, group 1, large subunit; selenocysteine-containing
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_00296: [Ni/Fe] hydrogenase, group 1, large subunit; selenocysteine-containing
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_2049: [Ni/Fe] hydrogenase, group 1, large subunit; selenocysteine-containing
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_1969: [Ni/Fe] hydrogenase, group 1, large subunit; selenocysteine-containing
 
Desulfohalobium retbaense DSM 5692
[Ni/Fe] hydrogenase, group 1, large subunit; selenocysteine-containing
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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