Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog DVU2644 - Desulfovibrionales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Amino acid metabolism
Effector:
Phylum: Proteobacteria/delta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 11 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Desulfovibrio vulgaris Hildenborough 4 1
Desulfovibrio vulgaris str. Miyazaki F
Desulfovibrio desulfuricans G20 3 1
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 2 1
Desulfovibrio piger ATCC 29098 4 2
Desulfovibrio salexigens DSM 2638 3 2
Desulfovibrio magneticus RS-1
Lawsonia intracellularis PHE/MN1-00
Desulfomicrobium baculatum DSM 4028
Desulfohalobium retbaense DSM 5692
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
DVU2647
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -42
score = 5.79944
sequence = AAAATGTCGACATTTA

Gene: DVU2647: endoribonuclease, L-PSP family
 
Desulfovibrio vulgaris str. Miyazaki F
*
Desulfovibrio desulfuricans G20

Site:
position = -64
score = 5.33415
sequence = AAATTGTCGACAATCG

Site:
position = -176
score = 6.08586
sequence = CGAATGTCGACATTTT

Gene: Dde_2582: endoribonuclease, L-PSP family
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098
*
Desulfovibrio salexigens DSM 2638

Site:
position = -67
score = 5.82737
sequence = AAAATGTCGACATTAG

Site:
position = -101
score = 4.35596
sequence = GAGATGTCGACATATA

Gene: Desal_1392: endoribonuclease, L-PSP family
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
endoribonuclease, L-PSP family
DVU2646
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU2646: 1-aminocyclopropane-1-carboxylate deaminase
 
Desulfovibrio vulgaris str. Miyazaki F
 
Desulfovibrio desulfuricans G20

Gene: Dde_2581: 1-aminocyclopropane-1-carboxylate deaminase
*
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Site:
position = -137
score = 5.23649
sequence = CAAATGTTGACATTTA

Gene: Ddes_0339: 1-aminocyclopropane-1-carboxylate deaminase
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_01487: 1-aminocyclopropane-1-carboxylate deaminase
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_1391: 1-aminocyclopropane-1-carboxylate deaminase
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
1-aminocyclopropane-1-carboxylate deaminase
DVU2645
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU2645: Na+/H+ antiporter family protein
 
Desulfovibrio vulgaris str. Miyazaki F
 
Desulfovibrio desulfuricans G20

Gene: Dde_2580: Na+/H+ antiporter family protein
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_0340: Na+/H+ antiporter family protein
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_01486: Na+/H+ antiporter family protein
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
Na+/H+ antiporter family protein
DVU2644
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU2644: transcriptional regulator, GntR family
 
Desulfovibrio vulgaris str. Miyazaki F
 
Desulfovibrio desulfuricans G20

Gene: Dde_2579: transcriptional regulator, GntR family
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_0341: transcriptional regulator, GntR family
*
Desulfovibrio piger ATCC 29098

Site:
position = -204
score = 5.71
sequence = CGAATGTCGACATACT

Site:
position = -282
score = 6.08586
sequence = CGAATGTCGACATTTT

Gene: DESPIG_01491: transcriptional regulator, GntR family
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_1386: transcriptional regulator, GntR family
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
transcriptional regulator, GntR family
DESPIG_01488
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
*
Desulfovibrio piger ATCC 29098

Site:
position = -49
score = 6.08586
sequence = AAAATGTCGACATTCG

Site:
position = -127
score = 5.71
sequence = AGTATGTCGACATTCG

Gene: DESPIG_01488: endoribonuclease, L-PSP family
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
endoribonuclease, L-PSP family
gltP
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_00436: probable H+/Na+-glutamate symporter
*
Desulfovibrio salexigens DSM 2638

Site:
position = -255
score = 5.82737
sequence = ATAATGTCGACATTTG

Gene: Desal_1393: probable H+/Na+-glutamate symporter
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00

Gene: LI0018: probable H+/Na+-glutamate symporter
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
probable H+/Na+-glutamate symporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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