Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog BirA - Desulfovibrionales

Properties
Regulator type: Transcription factor
Regulator family: BirA
Regulation mode: repressor
Biological process: Biotin biosynthesis
Effector: Biotin
Phylum: Proteobacteria/delta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Desulfovibrio vulgaris Hildenborough 9 2
Desulfovibrio vulgaris str. Miyazaki F 10 2
Desulfovibrio desulfuricans G20 10 2
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Desulfovibrio piger ATCC 29098
Desulfovibrio salexigens DSM 2638
Desulfovibrio magneticus RS-1
Lawsonia intracellularis PHE/MN1-00
Desulfomicrobium baculatum DSM 4028
Desulfohalobium retbaense DSM 5692
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
bioB
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -230
score = 8.48477
sequence = TTGTAAACC-(15)-CGTTGACAG

Gene: DVU2558: Biotin synthase (EC 2.8.1.6)
*
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -91
score = 9.13405
sequence = TTGTAAACC-(15)-GGTTGACAA

Gene: DvMF_1001: Biotin synthase (EC 2.8.1.6)
*
Desulfovibrio desulfuricans G20

Site:
position = -120
score = 8.70579
sequence = TTGTAAACC-(15)-AGTTGACAA

Gene: Dde_2655: Biotin synthase (EC 2.8.1.6)
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_1301: Biotin synthase (EC 2.8.1.6)
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_00325: Biotin synthase (EC 2.8.1.6)
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_2977: Biotin synthase (EC 2.8.1.6)
 
Desulfovibrio magneticus RS-1

Gene: DMR_33650: Biotin synthase (EC 2.8.1.6)
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_1124: Biotin synthase (EC 2.8.1.6)
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_1048: Biotin synthase (EC 2.8.1.6)
Biotin synthase (EC 2.8.1.6)
bioA
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU2559: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_1002: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Desulfovibrio desulfuricans G20

Gene: Dde_2656: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_1300: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_00326: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_2978: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_2718: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_1046: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
DVU2560
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU2560: conserved domain protein
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_1003: conserved domain protein
 
Desulfovibrio desulfuricans G20

Gene: Dde_2657: conserved domain protein
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_1123: conserved domain protein
 
Desulfohalobium retbaense DSM 5692
conserved domain protein
fabG
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU2561: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_1004: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
 
Desulfovibrio desulfuricans G20

Gene: Dde_2658: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_02525: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_1122: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
 
Desulfohalobium retbaense DSM 5692
3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
acpP
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU2562: acyl carrier protein, putative
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_1005: acyl carrier protein, putative
 
Desulfovibrio desulfuricans G20

Gene: Dde_2659: acyl carrier protein, putative
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_02526: acyl carrier protein, putative
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_1121: acyl carrier protein, putative
 
Desulfohalobium retbaense DSM 5692
acyl carrier protein, putative
fabF
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU2563: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41)
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_1006: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41)
 
Desulfovibrio desulfuricans G20

Gene: Dde_2660: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41)
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_02527: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41)
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_1120: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41)
 
Desulfohalobium retbaense DSM 5692
3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41)
Dde_2651
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_1007: hypothetical thioesterase domain protein
 
Desulfovibrio desulfuricans G20

Gene: Dde_2661: hypothetical thioesterase domain protein
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_02528: hypothetical thioesterase domain protein
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
hypothetical thioesterase domain protein
bioF
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU2564: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_1008: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Desulfovibrio desulfuricans G20

Gene: Dde_2662: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_02529: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_1118: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Desulfohalobium retbaense DSM 5692
8-amino-7-oxononanoate synthase (EC 2.3.1.47)
bioD
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU2565: Dethiobiotin synthetase (EC 6.3.3.3)
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_1009: Dethiobiotin synthetase (EC 6.3.3.3)
 
Desulfovibrio desulfuricans G20

Gene: Dde_2663: Dethiobiotin synthetase (EC 6.3.3.3)
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_2979: Dethiobiotin synthetase (EC 6.3.3.3)
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_1117: Dethiobiotin synthetase (EC 6.3.3.3)
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_1047: Dethiobiotin synthetase (EC 6.3.3.3)
Dethiobiotin synthetase (EC 6.3.3.3)
 
CRON 2.
birA
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -38
score = 8.48477
sequence = CTGTCAACG-(15)-GGTTTACAA

Gene: DVU2557: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor
*
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -38
score = 9.13405
sequence = TTGTCAACC-(15)-GGTTTACAA

Gene: DvMF_1000: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor
*
Desulfovibrio desulfuricans G20

Site:
position = -21
score = 8.70579
sequence = TTGTCAACT-(15)-GGTTTACAA

Gene: Dde_2654: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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