Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Fnr - Bacillales

Properties
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Anaerobic metabolism
Effector: Oxygen
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 39 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 10 5
Bacillus amyloliquefaciens FZB42 8 4
Bacillus pumilus SAFR-032 2 1
Bacillus licheniformis DSM 13 13 7
Anoxybacillus flavithermus WK1 1 1
Geobacillus kaustophilus HTA426 2 2
Bacillus cereus ATCC 14579 2 2
Bacillus halodurans C-125 6 4
Bacillus clausii KSM-K16 1 1
Oceanobacillus iheyensis HTE831 1 1
Paenibacillus sp. JDR-2 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ywcJ
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -64
score = 6.02949
sequence = TGTGAAATACTTCACA

Gene: BSU38060: Formate/nitrite family of transporters
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
*
Bacillus licheniformis DSM 13

Site:
position = -87
score = 5.33275
sequence = TGTGAAATGTTTCACA

Gene: BLi04135: Formate/nitrite family of transporters
*
Anoxybacillus flavithermus WK1

Site:
position = -41
score = 5.28145
sequence = TGTGAAAAACATCACA

Gene: Aflv_1436: Formate/nitrite family of transporters
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Formate/nitrite family of transporters
 
CRON 2.
naoX
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
*
Paenibacillus sp. JDR-2

Site:
position = -40
score = 5.42139
sequence = TGTGAATAATTTCACA

Site:
position = -205
score = 6.15755
sequence = TGTGAATTAATTCACA

Site:
position = -271
score = 5.32087
sequence = TGTGAAATTAATCACA

Gene: Pjdr2_2160: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
FAD-dependent pyridine nucleotide-disulphide oxidoreductase
 
CRON 3.
BH0228
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
*
Bacillus licheniformis DSM 13

Site:
position = -322
score = 5.82845
sequence = TGTGATGTACGTCACA

Gene: BLi02075: Conserved hypothetical protein
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
*
Bacillus halodurans C-125

Site:
position = -361
score = 5.71368
sequence = TGTGATATAGATCACA

Gene: BH0228: Conserved hypothetical protein
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Conserved hypothetical protein
narG
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -81
score = 5.76498
sequence = TGTGACATAGTTCACA

Gene: BSU37280: Respiratory nitrate reductase alpha chain (EC 1.7.99.4)
*
Bacillus amyloliquefaciens FZB42

Site:
position = -81
score = 5.76498
sequence = TGTGACATAGTTCACA

Gene: RBAM_034430: Respiratory nitrate reductase alpha chain (EC 1.7.99.4)
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13

Gene: BLi02074: Respiratory nitrate reductase alpha chain (EC 1.7.99.4)
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579

Gene: BC2118: Respiratory nitrate reductase alpha chain (EC 1.7.99.4)
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16

Gene: ABC0715: Respiratory nitrate reductase alpha chain (EC 1.7.99.4)
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Respiratory nitrate reductase alpha chain (EC 1.7.99.4)
narH
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU37270: Respiratory nitrate reductase beta chain (EC 1.7.99.4)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_034420: Respiratory nitrate reductase beta chain (EC 1.7.99.4)
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13

Gene: BLi02073: Respiratory nitrate reductase beta chain (EC 1.7.99.4)
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579

Gene: BC2119: Respiratory nitrate reductase beta chain (EC 1.7.99.4)
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16

Gene: ABC0716: Respiratory nitrate reductase beta chain (EC 1.7.99.4)
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Respiratory nitrate reductase beta chain (EC 1.7.99.4)
narJ
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU37260: Respiratory nitrate reductase delta chain (EC 1.7.99.4)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_034410: Respiratory nitrate reductase delta chain (EC 1.7.99.4)
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13

Gene: BLi02072: Respiratory nitrate reductase delta chain (EC 1.7.99.4)
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426

Gene: GK1827: Respiratory nitrate reductase delta chain (EC 1.7.99.4)
 
Bacillus cereus ATCC 14579

Gene: BC2120: Respiratory nitrate reductase delta chain (EC 1.7.99.4)
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16

Gene: ABC0717: Respiratory nitrate reductase delta chain (EC 1.7.99.4)
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Respiratory nitrate reductase delta chain (EC 1.7.99.4)
narI
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU37250: Respiratory nitrate reductase gamma chain (EC 1.7.99.4)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_034400: Respiratory nitrate reductase gamma chain (EC 1.7.99.4)
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13

Gene: BLi02071: Respiratory nitrate reductase gamma chain (EC 1.7.99.4)
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426

Gene: GK1828: Respiratory nitrate reductase gamma chain (EC 1.7.99.4)
 
Bacillus cereus ATCC 14579

Gene: BC2121: Respiratory nitrate reductase gamma chain (EC 1.7.99.4)
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16

Gene: ABC0718: Respiratory nitrate reductase gamma chain (EC 1.7.99.4)
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Respiratory nitrate reductase gamma chain (EC 1.7.99.4)
 
CRON 4.
coxA
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1360: Cytochrome c oxidase (B(O/a)3-type) chain II (EC 1.9.3.1)
 
Geobacillus kaustophilus HTA426

Gene: GK1547: Cytochrome c oxidase (B(O/a)3-type) chain II (EC 1.9.3.1)
 
Bacillus cereus ATCC 14579
*
Bacillus halodurans C-125

Site:
position = -224
score = 5.81866
sequence = TGTGATATAAGTCACA

Gene: BH0740: Cytochrome c oxidase (B(O/a)3-type) chain II (EC 1.9.3.1)
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831

Gene: OB1745: Cytochrome c oxidase (B(O/a)3-type) chain II (EC 1.9.3.1)
 
Paenibacillus sp. JDR-2
Cytochrome c oxidase (B(O/a)3-type) chain II (EC 1.9.3.1)
coxB
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1359: Cytochrome c oxidase (B(O/a)3-type) chain I (EC 1.9.3.1)
 
Geobacillus kaustophilus HTA426

Gene: GK1546: Cytochrome c oxidase (B(O/a)3-type) chain I (EC 1.9.3.1)
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125

Gene: BH0739: Cytochrome c oxidase (B(O/a)3-type) chain I (EC 1.9.3.1)
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831

Gene: OB1746: Cytochrome c oxidase (B(O/a)3-type) chain I (EC 1.9.3.1)
 
Paenibacillus sp. JDR-2
Cytochrome c oxidase (B(O/a)3-type) chain I (EC 1.9.3.1)
 
CRON 5.
narK
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -80
score = 6.01761
sequence = TGTGATGTAATTCACA

Gene: BSU37320: Nitrate/nitrite transporter
*
Bacillus amyloliquefaciens FZB42

Site:
position = -79
score = 6.01761
sequence = TGTGATGTAATTCACA

Gene: RBAM_034470: Nitrate/nitrite transporter
 
Bacillus pumilus SAFR-032
*
Bacillus licheniformis DSM 13

Site:
position = -95
score = 5.96839
sequence = TGTGACGTAATTCACA

Gene: BLi02081: Nitrate/nitrite transporter
 
Anoxybacillus flavithermus WK1
*
Geobacillus kaustophilus HTA426

Site:
position = -68
score = 4.6987
sequence = TGTGATCAACCTCACA

Gene: GK0766: Nitrate/nitrite transporter
 
Bacillus cereus ATCC 14579

Gene: BC2128: Nitrate/nitrite transporter
 
Bacillus halodurans C-125

Gene: BH0232: Nitrate/nitrite transporter
 2
Bacillus clausii KSM-K16

Gene: ABC0722: Nitrate/nitrite transporter

Gene: ABC0722: Nitrate/nitrite transporter
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Nitrate/nitrite transporter
fnr
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU37310: Transcriptional regulator of anaerobic metabolism, FNR family
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_034460: Transcriptional regulator of anaerobic metabolism, FNR family
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13

Gene: BLi02080: Transcriptional regulator of anaerobic metabolism, FNR family
 
Anoxybacillus flavithermus WK1

Gene: Aflv_2153: Transcriptional regulator of anaerobic metabolism, FNR family
 
Geobacillus kaustophilus HTA426

Gene: GK0768: Transcriptional regulator of anaerobic metabolism, FNR family
*
Bacillus cereus ATCC 14579

Site:
position = -192
score = 4.75445
sequence = TGTGACTTTTCTCACA

Gene: BC2122: Transcriptional regulator of anaerobic metabolism, FNR family
 
Bacillus halodurans C-125

Gene: BH0231: Transcriptional regulator of anaerobic metabolism, FNR family
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_5250: Transcriptional regulator of anaerobic metabolism, FNR family
Transcriptional regulator of anaerobic metabolism, FNR family
ywiC
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
*
Bacillus licheniformis DSM 13

Site:
position = -92
score = 5.7408
sequence = AGTGATTTAATTCACA

Gene: BLi02079: Putative integral inner membrane protein
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Putative integral inner membrane protein
 
CRON 6.
arfM
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -73
score = 5.61274
sequence = TGTGAAATACATCACT

Gene: BSU37290: Anaerobic respiration and fermentation modulator
*
Bacillus amyloliquefaciens FZB42

Site:
position = -73
score = 5.61274
sequence = TGTGAAATACATCACT

Gene: RBAM_034440: Anaerobic respiration and fermentation modulator
 
Bacillus pumilus SAFR-032
*
Bacillus licheniformis DSM 13

Site:
position = -73
score = 5.7408
sequence = TGTGAATTAAATCACT

Gene: BLi02078: Anaerobic respiration and fermentation modulator
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
*
Bacillus halodurans C-125

Site:
position = -74
score = 4.80122
sequence = TGTGAACCATGTCACT

Gene: BH0229: Anaerobic respiration and fermentation modulator
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Anaerobic respiration and fermentation modulator
 
CRON 7.
adh
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
*
Bacillus licheniformis DSM 13

Site:
position = -90
score = 5.33275
sequence = TGTGAAATGTTTCACA

Gene: BLi04290: NAD-dependent aldehyde dehydrogenase domain and Fe-dependent alcohol dehydrogense domain
 
Anoxybacillus flavithermus WK1

Gene: Aflv_2814: NAD-dependent aldehyde dehydrogenase domain and Fe-dependent alcohol dehydrogense domain
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -212
score = 5.33275
sequence = TGTGAAACATTTCACA

Site:
position = -127
score = 5.33275
sequence = TGTGAAAAATTTCACA

Gene: BC4365: NAD-dependent aldehyde dehydrogenase domain and Fe-dependent alcohol dehydrogense domain
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
NAD-dependent aldehyde dehydrogenase domain and Fe-dependent alcohol dehydrogense domain
 
CRON 8.
ldh
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -60
score = 6.02949
sequence = TGTGAAATACTTCACA

Site:
position = -83
score = 4.73444
sequence = TGTGAAGTGTTGCACA

Gene: BSU03050: L-lactate dehydrogenase (EC 1.1.1.27)
*
Bacillus amyloliquefaciens FZB42

Site:
position = -57
score = 6.02949
sequence = TGTGAAATACTTCACA

Site:
position = -80
score = 5.38196
sequence = TGTGAAGTATTGCACA

Gene: RBAM_003290: L-lactate dehydrogenase (EC 1.1.1.27)
*
Bacillus pumilus SAFR-032

Site:
position = -54
score = 6.02949
sequence = TGTGAAATACTTCACA

Site:
position = -77
score = 5.38196
sequence = TGTGAAGTATTGCACA

Gene: BPUM_0277: L-lactate dehydrogenase (EC 1.1.1.27)
*
Bacillus licheniformis DSM 13

Site:
position = -57
score = 5.38196
sequence = TGTGAAGAATTTCACA

Site:
position = -80
score = 5.38196
sequence = TGTGAAGTATTGCACA

Gene: BLi00366: L-lactate dehydrogenase (EC 1.1.1.27)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0889: L-lactate dehydrogenase (EC 1.1.1.27)
*
Geobacillus kaustophilus HTA426

Site:
position = -40
score = 4.8625
sequence = TGTGAATATATTCACA

Gene: GK0475: L-lactate dehydrogenase (EC 1.1.1.27)
 
Bacillus cereus ATCC 14579
*
Bacillus halodurans C-125

Site:
position = -42
score = 4.77386
sequence = TGTGAAAATATTCACA

Site:
position = -217
score = 5.98027
sequence = TGTGAAATATTTCACA

Site:
position = -274
score = 5.98027
sequence = TGTGAAATATTTCACA

Gene: BH3937: L-lactate dehydrogenase (EC 1.1.1.27)
*
Bacillus clausii KSM-K16

Site:
position = -66
score = 5.42139
sequence = TGTGAAATAATGCACA

Site:
position = -43
score = 5.42139
sequence = TGTGAATAATTTCACA

Gene: ABC2872: L-lactate dehydrogenase (EC 1.1.1.27)
*
Oceanobacillus iheyensis HTE831

Site:
position = -66
score = 5.98027
sequence = TGTGAAATATTTCACA

Gene: OB3279: L-lactate dehydrogenase (EC 1.1.1.27)
 
Paenibacillus sp. JDR-2
L-lactate dehydrogenase (EC 1.1.1.27)
lctP
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU03060: L-lactate permease
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032

Gene: BPUM_0278: L-lactate permease
 
Bacillus licheniformis DSM 13

Gene: BLi00367: L-lactate permease
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125

Gene: BH3936: L-lactate permease
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
L-lactate permease
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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