Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog KdgR - Thermotogales

Properties
Regulator type: Transcription factor
Regulator family: IclR
Regulation mode: repressor
Biological process: Glucuronate utilization
Effector: 2-keto-3-deoxygluconate
Phylum: Thermotogae
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 26 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Thermotoga maritima MSB8 19 6
Thermotoga sp. RQ2 10 4
Thermotoga neapolitana DSM 4359 11 4
Thermotoga petrophila RKU-1 19 6
Thermotoga naphthophila RKU-10 19 6
Thermotoga lettingae TMO
Thermosipho africanus TCF52B
Thermosipho melanesiensis BI429
Fervidobacterium nodosum Rt17-B1
Petrotoga mobilis SJ95
Thermotogales bacterium TBF 19.5.1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
uxaC
*
Thermotoga maritima MSB8

Site:
position = -32
score = 5.88409
sequence = TGAGAAAACCATTTTCAAA

Gene: TM0064: Uronate isomerase (EC 5.3.1.12)
*
Thermotoga sp. RQ2

Site:
position = -32
score = 5.88409
sequence = TGAGAAAACCATTTTCAAA

Gene: TRQ2_0883: Uronate isomerase (EC 5.3.1.12)
*
Thermotoga neapolitana DSM 4359

Site:
position = -33
score = 6.1257
sequence = TGAGAAAATCATTTTCACA

Gene: CTN_0630: Uronate isomerase (EC 5.3.1.12)
*
Thermotoga petrophila RKU-1

Site:
position = -32
score = 5.88409
sequence = TGAGAAAACCATTTTCAAA

Gene: Tpet_0860: Uronate isomerase (EC 5.3.1.12)
*
Thermotoga naphthophila RKU-10

Site:
position = -32
score = 5.88409
sequence = TGAGAAAACCATTTTCAAA

Gene: Tnap_0694: Uronate isomerase (EC 5.3.1.12)
 
Thermotoga lettingae TMO
 
Thermosipho africanus TCF52B
 
Thermosipho melanesiensis BI429
 
Fervidobacterium nodosum Rt17-B1
 
Petrotoga mobilis SJ95
 
Thermotogales bacterium TBF 19.5.1
Uronate isomerase (EC 5.3.1.12)
TM0063
 
Thermotoga maritima MSB8

Gene: TM0063: hypothetical protein
 
Thermotoga sp. RQ2

Gene: TRQ2_0884: hypothetical protein
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0631: hypothetical protein
 
Thermotoga petrophila RKU-1

Gene: Tpet_0861: hypothetical protein
 
Thermotoga naphthophila RKU-10

Gene: Tnap_0693: hypothetical protein
 
Thermotoga lettingae TMO
 
Thermosipho africanus TCF52B
 
Thermosipho melanesiensis BI429
 
Fervidobacterium nodosum Rt17-B1
 
Petrotoga mobilis SJ95
 
Thermotogales bacterium TBF 19.5.1
hypothetical protein
 
CRON 2.
CTN_1813
 
Thermotoga maritima MSB8
 
Thermotoga sp. RQ2
*
Thermotoga neapolitana DSM 4359

Site:
position = -191
score = 5.86065
sequence = TGTGAAAAAGGCTTTCAAA

Gene: CTN_0633: Transposase, IS605 OrfB family
 
Thermotoga petrophila RKU-1
 
Thermotoga naphthophila RKU-10
 
Thermotoga lettingae TMO
 
Thermosipho africanus TCF52B
 
Thermosipho melanesiensis BI429
 
Fervidobacterium nodosum Rt17-B1
 
Petrotoga mobilis SJ95
 
Thermotogales bacterium TBF 19.5.1
Transposase, IS605 OrfB family
xtpF
*
Thermotoga maritima MSB8

Site:
position = -199
score = 6.01104
sequence = TGTGAAAGGAACTTTCAAA

Gene: TM0060: Xylan oligosaccharide ABC transporter, permease component 1
*
Thermotoga sp. RQ2

Site:
position = -199
score = 6.01104
sequence = TGTGAAAGGAACTTTCAAA

Gene: TRQ2_0886: Xylan oligosaccharide ABC transporter, permease component 1
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0634: Xylan oligosaccharide ABC transporter, permease component 1
*
Thermotoga petrophila RKU-1

Site:
position = -199
score = 6.01104
sequence = TGTGAAAGGAACTTTCAAA

Gene: Tpet_0864: Xylan oligosaccharide ABC transporter, permease component 1
*
Thermotoga naphthophila RKU-10

Site:
position = -198
score = 6.01104
sequence = TGTGAAAGGAACTTTCAAA

Gene: Tnap_0690: Xylan oligosaccharide ABC transporter, permease component 1
 
Thermotoga lettingae TMO
 
Thermosipho africanus TCF52B
 
Thermosipho melanesiensis BI429
 
Fervidobacterium nodosum Rt17-B1
 
Petrotoga mobilis SJ95
 
Thermotogales bacterium TBF 19.5.1
Xylan oligosaccharide ABC transporter, permease component 1
xtpG
 
Thermotoga maritima MSB8

Gene: TM0059: Xylan oligosaccharide ABC transporter, permease component 2
 
Thermotoga sp. RQ2

Gene: TRQ2_0887: Xylan oligosaccharide ABC transporter, permease component 2
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0635: Xylan oligosaccharide ABC transporter, permease component 2
 
Thermotoga petrophila RKU-1

Gene: Tpet_0865: Xylan oligosaccharide ABC transporter, permease component 2
 
Thermotoga naphthophila RKU-10

Gene: Tnap_0689: Xylan oligosaccharide ABC transporter, permease component 2
 
Thermotoga lettingae TMO
 
Thermosipho africanus TCF52B
 
Thermosipho melanesiensis BI429
 
Fervidobacterium nodosum Rt17-B1
 
Petrotoga mobilis SJ95
 
Thermotogales bacterium TBF 19.5.1
Xylan oligosaccharide ABC transporter, permease component 2
xtpK
 
Thermotoga maritima MSB8

Gene: TM0058: Xylan oligosaccharide ABC transporter, ATP-binding protein 1
 
Thermotoga sp. RQ2

Gene: TRQ2_0888: Xylan oligosaccharide ABC transporter, ATP-binding protein 1
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0636: Xylan oligosaccharide ABC transporter, ATP-binding protein 1
 
Thermotoga petrophila RKU-1

Gene: Tpet_0866: Xylan oligosaccharide ABC transporter, ATP-binding protein 1
 
Thermotoga naphthophila RKU-10

Gene: Tnap_0688: Xylan oligosaccharide ABC transporter, ATP-binding protein 1
 
Thermotoga lettingae TMO
 
Thermosipho africanus TCF52B
 
Thermosipho melanesiensis BI429
 
Fervidobacterium nodosum Rt17-B1
 
Petrotoga mobilis SJ95
 
Thermotogales bacterium TBF 19.5.1
Xylan oligosaccharide ABC transporter, ATP-binding protein 1
xtpL
 
Thermotoga maritima MSB8

Gene: TM0057: Xylan oligosaccharide ABC transporter, ATP-binding protein 2
 
Thermotoga sp. RQ2

Gene: TRQ2_0889: Xylan oligosaccharide ABC transporter, ATP-binding protein 2
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0637: Xylan oligosaccharide ABC transporter, ATP-binding protein 2
 
Thermotoga petrophila RKU-1

Gene: Tpet_0867: Xylan oligosaccharide ABC transporter, ATP-binding protein 2
 
Thermotoga naphthophila RKU-10

Gene: Tnap_0687: Xylan oligosaccharide ABC transporter, ATP-binding protein 2
 
Thermotoga lettingae TMO
 
Thermosipho africanus TCF52B
 
Thermosipho melanesiensis BI429
 
Fervidobacterium nodosum Rt17-B1
 
Petrotoga mobilis SJ95
 
Thermotogales bacterium TBF 19.5.1
Xylan oligosaccharide ABC transporter, ATP-binding protein 2
xtpE
 
Thermotoga maritima MSB8

Gene: TM0056: Xylan oligosaccharide ABC transporter, substrate-binding component
 
Thermotoga sp. RQ2

Gene: TRQ2_0890: Xylan oligosaccharide ABC transporter, substrate-binding component
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0638: Xylan oligosaccharide ABC transporter, substrate-binding component
 
Thermotoga petrophila RKU-1

Gene: Tpet_0868: Xylan oligosaccharide ABC transporter, substrate-binding component
 
Thermotoga naphthophila RKU-10

Gene: Tnap_0686: Xylan oligosaccharide ABC transporter, substrate-binding component
 
Thermotoga lettingae TMO
 
Thermosipho africanus TCF52B
 
Thermosipho melanesiensis BI429
 
Fervidobacterium nodosum Rt17-B1
 
Petrotoga mobilis SJ95
 
Thermotogales bacterium TBF 19.5.1
Xylan oligosaccharide ABC transporter, substrate-binding component
aguA
 
Thermotoga maritima MSB8

Gene: TM0055: Alpha-glucuronidase (EC 3.2.1.139)
 
Thermotoga sp. RQ2

Gene: TRQ2_0891: Alpha-glucuronidase (EC 3.2.1.139)
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0639: Alpha-glucuronidase (EC 3.2.1.139)
 
Thermotoga petrophila RKU-1

Gene: Tpet_0869: Alpha-glucuronidase (EC 3.2.1.139)
 
Thermotoga naphthophila RKU-10

Gene: Tnap_0685: Alpha-glucuronidase (EC 3.2.1.139)
 
Thermotoga lettingae TMO
 
Thermosipho africanus TCF52B
 
Thermosipho melanesiensis BI429
 
Fervidobacterium nodosum Rt17-B1
 
Petrotoga mobilis SJ95
 
Thermotogales bacterium TBF 19.5.1
Alpha-glucuronidase (EC 3.2.1.139)
 
CRON 3.
xynA1
*
Thermotoga maritima MSB8

Site:
position = -138
score = 6.01104
sequence = TTTGAAAGTTCCTTTCACA

Gene: TM0061: Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)
*
Thermotoga sp. RQ2

Site:
position = -138
score = 6.01104
sequence = TTTGAAAGTTCCTTTCACA

Gene: TRQ2_0885: Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)
*
Thermotoga neapolitana DSM 4359

Site:
position = -91
score = 5.86065
sequence = TTTGAAAGCCTTTTTCACA

Gene: CTN_0632: Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)
*
Thermotoga petrophila RKU-1

Site:
position = -139
score = 6.01104
sequence = TTTGAAAGTTCCTTTCACA

Gene: Tpet_0863: Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)
*
Thermotoga naphthophila RKU-10

Site:
position = -138
score = 6.01104
sequence = TTTGAAAGTTCCTTTCACA

Gene: Tnap_0691: Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)
 
Thermotoga lettingae TMO
 
Thermosipho africanus TCF52B
 
Thermosipho melanesiensis BI429
 
Fervidobacterium nodosum Rt17-B1
 
Petrotoga mobilis SJ95
 
Thermotogales bacterium TBF 19.5.1
Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)
cenC
 
Thermotoga maritima MSB8

Gene: TM0062: Carbohydrate-binding CenC domain protein
 
Thermotoga sp. RQ2
 
Thermotoga neapolitana DSM 4359
 
Thermotoga petrophila RKU-1

Gene: Tpet_0862: Carbohydrate-binding CenC domain protein
 
Thermotoga naphthophila RKU-10

Gene: Tnap_0692: Carbohydrate-binding CenC domain protein
 
Thermotoga lettingae TMO
 
Thermosipho africanus TCF52B
 
Thermosipho melanesiensis BI429
 
Fervidobacterium nodosum Rt17-B1
 
Petrotoga mobilis SJ95
 
Thermotogales bacterium TBF 19.5.1
Carbohydrate-binding CenC domain protein
 
CRON 4.
kdgR
*
Thermotoga maritima MSB8

Site:
position = -88
score = 5.88409
sequence = TTTGAAAATGGTTTTCTCA

Gene: TM0065: Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family
*
Thermotoga sp. RQ2

Site:
position = -88
score = 5.88409
sequence = TTTGAAAATGGTTTTCTCA

Gene: TRQ2_0882: Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family
*
Thermotoga neapolitana DSM 4359

Site:
position = -48
score = 6.1257
sequence = TGTGAAAATGATTTTCTCA

Gene: CTN_0629: Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family
*
Thermotoga petrophila RKU-1

Site:
position = -88
score = 5.88409
sequence = TTTGAAAATGGTTTTCTCA

Gene: Tpet_0859: Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family
*
Thermotoga naphthophila RKU-10

Site:
position = -88
score = 5.88409
sequence = TTTGAAAATGGTTTTCTCA

Gene: Tnap_0695: Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family
 
Thermotoga lettingae TMO
 
Thermosipho africanus TCF52B
 
Thermosipho melanesiensis BI429
 
Fervidobacterium nodosum Rt17-B1
 
Petrotoga mobilis SJ95
 
Thermotogales bacterium TBF 19.5.1
Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family
 
CRON 5.
xloE
*
Thermotoga maritima MSB8

Site:
position = -135
score = 5.19291
sequence = TTTGAAATAATCTTTTACA

Gene: TM0071: Xylose oligosaccharides ABC transporter, sugar-binding protein
 
Thermotoga sp. RQ2

Gene: TRQ2_0876: Xylose oligosaccharides ABC transporter, sugar-binding protein
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0622: Xylose oligosaccharides ABC transporter, sugar-binding protein
*
Thermotoga petrophila RKU-1

Site:
position = -136
score = 5.19291
sequence = TTTGAAATAATCTTTTACA

Gene: Tpet_0853: Xylose oligosaccharides ABC transporter, sugar-binding protein
*
Thermotoga naphthophila RKU-10

Site:
position = -135
score = 5.19291
sequence = TTTGAAATAATCTTTTACA

Gene: Tnap_0701: Xylose oligosaccharides ABC transporter, sugar-binding protein
 
Thermotoga lettingae TMO

Gene: Tlet_0350: Xylose oligosaccharides ABC transporter, sugar-binding protein
 
Thermosipho africanus TCF52B
 
Thermosipho melanesiensis BI429
 
Fervidobacterium nodosum Rt17-B1
 
Petrotoga mobilis SJ95
 
Thermotogales bacterium TBF 19.5.1
Xylose oligosaccharides ABC transporter, sugar-binding protein
xloF
 
Thermotoga maritima MSB8

Gene: TM0072: Xylose oligosaccharides ABC transporter, permease protein 1
 
Thermotoga sp. RQ2

Gene: TRQ2_0875: Xylose oligosaccharides ABC transporter, permease protein 1
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0621: Xylose oligosaccharides ABC transporter, permease protein 1
 
Thermotoga petrophila RKU-1

Gene: Tpet_0852: Xylose oligosaccharides ABC transporter, permease protein 1
 
Thermotoga naphthophila RKU-10

Gene: Tnap_0702: Xylose oligosaccharides ABC transporter, permease protein 1
 
Thermotoga lettingae TMO

Gene: Tlet_0351: Xylose oligosaccharides ABC transporter, permease protein 1
 
Thermosipho africanus TCF52B
 
Thermosipho melanesiensis BI429
 
Fervidobacterium nodosum Rt17-B1
 
Petrotoga mobilis SJ95
 
Thermotogales bacterium TBF 19.5.1
Xylose oligosaccharides ABC transporter, permease protein 1
xloG
 
Thermotoga maritima MSB8

Gene: TM0073: Xylose oligosaccharides ABC transporter, permease protein 2
 
Thermotoga sp. RQ2

Gene: TRQ2_0874: Xylose oligosaccharides ABC transporter, permease protein 2
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0620: Xylose oligosaccharides ABC transporter, permease protein 2
 
Thermotoga petrophila RKU-1

Gene: Tpet_0851: Xylose oligosaccharides ABC transporter, permease protein 2
 
Thermotoga naphthophila RKU-10

Gene: Tnap_0703: Xylose oligosaccharides ABC transporter, permease protein 2
 
Thermotoga lettingae TMO

Gene: Tlet_0352: Xylose oligosaccharides ABC transporter, permease protein 2
 
Thermosipho africanus TCF52B
 
Thermosipho melanesiensis BI429
 
Fervidobacterium nodosum Rt17-B1
 
Petrotoga mobilis SJ95
 
Thermotogales bacterium TBF 19.5.1
Xylose oligosaccharides ABC transporter, permease protein 2
xloK
 
Thermotoga maritima MSB8

Gene: TM0074: Xylose oligosaccharides ABC transporter, ATP-binding protein 1
 
Thermotoga sp. RQ2

Gene: TRQ2_0873: Xylose oligosaccharides ABC transporter, ATP-binding protein 1
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0619: Xylose oligosaccharides ABC transporter, ATP-binding protein 1
 
Thermotoga petrophila RKU-1

Gene: Tpet_0850: Xylose oligosaccharides ABC transporter, ATP-binding protein 1
 
Thermotoga naphthophila RKU-10

Gene: Tnap_0704: Xylose oligosaccharides ABC transporter, ATP-binding protein 1
 
Thermotoga lettingae TMO

Gene: Tlet_0353: Xylose oligosaccharides ABC transporter, ATP-binding protein 1
 
Thermosipho africanus TCF52B
 
Thermosipho melanesiensis BI429
 
Fervidobacterium nodosum Rt17-B1
 
Petrotoga mobilis SJ95
 
Thermotogales bacterium TBF 19.5.1
Xylose oligosaccharides ABC transporter, ATP-binding protein 1
xloL
 
Thermotoga maritima MSB8

Gene: TM0075: Xylose oligosaccharides ABC transporter, ATP-binding protein 2
 
Thermotoga sp. RQ2

Gene: TRQ2_0872: Xylose oligosaccharides ABC transporter, ATP-binding protein 2
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0618: Xylose oligosaccharides ABC transporter, ATP-binding protein 2
 
Thermotoga petrophila RKU-1

Gene: Tpet_0849: Xylose oligosaccharides ABC transporter, ATP-binding protein 2
 
Thermotoga naphthophila RKU-10

Gene: Tnap_0705: Xylose oligosaccharides ABC transporter, ATP-binding protein 2
 
Thermotoga lettingae TMO

Gene: Tlet_0354: Xylose oligosaccharides ABC transporter, ATP-binding protein 2
 
Thermosipho africanus TCF52B
 
Thermosipho melanesiensis BI429
 
Fervidobacterium nodosum Rt17-B1
 
Petrotoga mobilis SJ95
 
Thermotogales bacterium TBF 19.5.1
Xylose oligosaccharides ABC transporter, ATP-binding protein 2
xyl3
 
Thermotoga maritima MSB8

Gene: TM0076: Beta-xylosidase (EC 3.2.1.37)
 
Thermotoga sp. RQ2

Gene: TRQ2_0871: Beta-xylosidase (EC 3.2.1.37)
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0616: Beta-xylosidase (EC 3.2.1.37)
 
Thermotoga petrophila RKU-1

Gene: Tpet_0848: Beta-xylosidase (EC 3.2.1.37)
 
Thermotoga naphthophila RKU-10

Gene: Tnap_0706: Beta-xylosidase (EC 3.2.1.37)
 
Thermotoga lettingae TMO

Gene: Tlet_0355: Beta-xylosidase (EC 3.2.1.37)
 
Thermosipho africanus TCF52B
 
Thermosipho melanesiensis BI429
 
Fervidobacterium nodosum Rt17-B1
 
Petrotoga mobilis SJ95
 
Thermotogales bacterium TBF 19.5.1
Beta-xylosidase (EC 3.2.1.37)
axeA
 
Thermotoga maritima MSB8

Gene: TM0077: Acetyl xylan esterase (EC 3.1.1.41)
 
Thermotoga sp. RQ2

Gene: TRQ2_0870: Acetyl xylan esterase (EC 3.1.1.41)
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0615: Acetyl xylan esterase (EC 3.1.1.41)
 
Thermotoga petrophila RKU-1

Gene: Tpet_0847: Acetyl xylan esterase (EC 3.1.1.41)
 
Thermotoga naphthophila RKU-10

Gene: Tnap_0707: Acetyl xylan esterase (EC 3.1.1.41)
 
Thermotoga lettingae TMO

Gene: Tlet_0356: Acetyl xylan esterase (EC 3.1.1.41)
 
Thermosipho africanus TCF52B
 
Thermosipho melanesiensis BI429
 
Fervidobacterium nodosum Rt17-B1
 
Petrotoga mobilis SJ95
 
Thermotogales bacterium TBF 19.5.1
Acetyl xylan esterase (EC 3.1.1.41)
 
CRON 6.
xynB
*
Thermotoga maritima MSB8

Site:
position = -103
score = 5.19291
sequence = TGTAAAAGATTATTTCAAA

Gene: TM0070: Endo-1,4-beta-xylanase B ( EC 3.2.1.8 )
 
Thermotoga sp. RQ2

Gene: TRQ2_0877: Endo-1,4-beta-xylanase B ( EC 3.2.1.8 )
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0623: Endo-1,4-beta-xylanase B ( EC 3.2.1.8 )
*
Thermotoga petrophila RKU-1

Site:
position = -103
score = 5.19291
sequence = TGTAAAAGATTATTTCAAA

Gene: Tpet_0854: Endo-1,4-beta-xylanase B ( EC 3.2.1.8 )
*
Thermotoga naphthophila RKU-10

Site:
position = -103
score = 5.19291
sequence = TGTAAAAGATTATTTCAAA

Gene: Tnap_0700: Endo-1,4-beta-xylanase B ( EC 3.2.1.8 )
 
Thermotoga lettingae TMO
 
Thermosipho africanus TCF52B
 
Thermosipho melanesiensis BI429
 
Fervidobacterium nodosum Rt17-B1
 
Petrotoga mobilis SJ95
 
Thermotogales bacterium TBF 19.5.1
Endo-1,4-beta-xylanase B ( EC 3.2.1.8 )
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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