Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog LexA2 - Pseudomonadaceae

Properties
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 5 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Azotobacter vinelandii AvOP
Pseudomonas aeruginosa PAO1
Pseudomonas entomophila L48 4 1
Pseudomonas fluorescens Pf-5 4 1
Pseudomonas mendocina ymp
Pseudomonas putida KT2440 5 2
Pseudomonas stutzeri A1501
Pseudomonas syringae pv. tomato str. DC3000 4 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PA2381
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1

Gene: PA2381: hypothetical protein
 
Pseudomonas entomophila L48
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
*
Pseudomonas putida KT2440

Site:
position = -85
score = 6.7227
sequence = GAGTACAAATGTGCTC

Gene: PP3901: hypothetical protein
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000
hypothetical protein
 
CRON 2.
lexA2
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
*
Pseudomonas entomophila L48

Site:
position = -17
score = 6.79756
sequence = GAGTACAAATGTACTC

Gene: PSEEN2412: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Pseudomonas fluorescens Pf-5

Site:
position = -17
score = 6.79756
sequence = GAGTACAAATGTACTC

Gene: PFL_3700: SOS-response repressor and protease LexA (EC 3.4.21.88)
 
Pseudomonas mendocina ymp
*
Pseudomonas putida KT2440

Site:
position = -17
score = 6.7227
sequence = GAGTACAAATGTGCTC

Gene: PP3116: SOS-response repressor and protease LexA (EC 3.4.21.88)
 
Pseudomonas stutzeri A1501
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -17
score = 6.79756
sequence = GAGTACAAATGTACTC

Gene: PSPTO2792: SOS-response repressor and protease LexA (EC 3.4.21.88)
SOS-response repressor and protease LexA (EC 3.4.21.88)
imuA
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1

Gene: PA0671: RecA/RadA recombinase
 
Pseudomonas entomophila L48

Gene: PSEEN2413: RecA/RadA recombinase
 
Pseudomonas fluorescens Pf-5

Gene: PFL_3699: RecA/RadA recombinase
 
Pseudomonas mendocina ymp

Gene: Pmen_1936: RecA/RadA recombinase
 
Pseudomonas putida KT2440

Gene: PP3117: RecA/RadA recombinase
 
Pseudomonas stutzeri A1501

Gene: PST_2344: RecA/RadA recombinase
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO2793: RecA/RadA recombinase
RecA/RadA recombinase
imuB
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1

Gene: PA0670: DNA polymerase-like protein PA0670
 
Pseudomonas entomophila L48

Gene: PSEEN2414: DNA polymerase-like protein PA0670
 
Pseudomonas fluorescens Pf-5

Gene: PFL_3698: DNA polymerase-like protein PA0670
 
Pseudomonas mendocina ymp

Gene: Pmen_1935: DNA polymerase-like protein PA0670
 
Pseudomonas putida KT2440

Gene: PP3118: DNA polymerase-like protein PA0670
 
Pseudomonas stutzeri A1501

Gene: PST_2346: DNA polymerase-like protein PA0670
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO2794: DNA polymerase-like protein PA0670
DNA polymerase-like protein PA0670
dnaE2
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1

Gene: PA0669: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Pseudomonas entomophila L48

Gene: PSEEN2415: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Pseudomonas fluorescens Pf-5

Gene: PFL_3697: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Pseudomonas mendocina ymp

Gene: Pmen_1934: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Pseudomonas putida KT2440

Gene: PP_3119: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Pseudomonas stutzeri A1501

Gene: PST_2347: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO2795: DNA polymerase III alpha subunit (EC 2.7.7.7)
DNA polymerase III alpha subunit (EC 2.7.7.7)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD