Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxQ - Oceanospirillales/Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis
Effector: Pyridoxal-5-phosphate
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 1 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Alcanivorax borkumensis SK2
Chromohalobacter salexigens DSM 3043
Hahella chejuensis KCTC 2396 1 1
Marinomonas sp. MWYL1
Oceanospirillum sp. MED92
Oceanobacter sp. RED65
Reinekea sp. MED297
Cellvibrio japonicus Ueda107
Marinobacter aqueolei
Marinobacter sp. ELB17
Saccharophagus degradans 2-40
Teredinibacter turnerae T7901
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pdxO
 
Alcanivorax borkumensis SK2
 
Chromohalobacter salexigens DSM 3043
*
Hahella chejuensis KCTC 2396

Site:
position = -104
score = 10.2935
sequence = AAGTGGACCTG-(13)-AAGTGGACATT-(4)-CATATCCAATT

Gene: HCH_01885: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein
 
Marinomonas sp. MWYL1
 
Oceanospirillum sp. MED92
 
Oceanobacter sp. RED65
 
Reinekea sp. MED297
 
Cellvibrio japonicus Ueda107
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD