Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog RbkR - Methanosarcinales

Properties
Regulator type: Transcription factor
Regulator family: [Other]
Regulation mode:
Biological process: Riboflavin biosynthesis
Effector: Flavin mononucleotide
Phylum: Euryarchaeota
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 9 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Methanococcoides burtonii DSM 6242 2 1
Methanohalophilus mahii DSM 5219 2 1
Methanosaeta thermophila PT
Methanosarcina acetivorans C2A 2 1
Methanosarcina barkeri str. fusaro 2 1
Methanosarcina mazei Goe1 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rbkR
*
Methanococcoides burtonii DSM 6242

Site:
position = -58
score = 6.05207
sequence = CGTCTCATATTTGAGATG

Site:
position = -40
score = 5.61108
sequence = CATCTCATATTTGAGGCA

Gene: Mbur_1724: DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase
*
Methanohalophilus mahii DSM 5219

Site:
position = -29
score = 5.93117
sequence = CGTCTCAATTTTGAGATG

Gene: Mmah_2024: DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase
 
Methanosaeta thermophila PT
*
Methanosarcina acetivorans C2A

Site:
position = -15
score = 5.89468
sequence = CATCTCATTATTGAGATG

Site:
position = 3
score = 4.98863
sequence = CGTCTCAAAATTAAGGCA

Gene: MA0547: DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase
*
Methanosarcina barkeri str. fusaro

Site:
position = -46
score = 5.68768
sequence = CATCTCAGAATTGAGATG

Site:
position = -28
score = 5.54105
sequence = CATCTCAAAATTAAGATA

Gene: Mbar_A1523: DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase
*
Methanosarcina mazei Goe1

Site:
position = -33
score = 5.28452
sequence = CATCTCAAAATTAAGGTA

Site:
position = -51
score = 5.71494
sequence = TATCTCATAATTGAGACG

Gene: MM1709: DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase
DNA-binding HTH domain in riboflavin kinase / CTP-dependent archaeal riboflavin kinase
ribB
 
Methanococcoides burtonii DSM 6242

Gene: Mbur_1723: 3,4-dihydroxy-2-butanone 4-phosphate synthase
 
Methanohalophilus mahii DSM 5219

Gene: Mmah_2023: 3,4-dihydroxy-2-butanone 4-phosphate synthase
 
Methanosaeta thermophila PT
 
Methanosarcina acetivorans C2A

Gene: MA0548: 3,4-dihydroxy-2-butanone 4-phosphate synthase
 
Methanosarcina barkeri str. fusaro

Gene: Mbar_A1524: 3,4-dihydroxy-2-butanone 4-phosphate synthase
 
Methanosarcina mazei Goe1

Gene: MM1710: 3,4-dihydroxy-2-butanone 4-phosphate synthase
3,4-dihydroxy-2-butanone 4-phosphate synthase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD